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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YBX3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
161.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
140.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
112.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
88.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
85.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
84.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
78.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
75.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
68.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
67.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
63.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
61.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
60.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
60.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
57.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
56.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
54.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
50.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
43.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
37.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
36.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
26.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
26.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
23.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
20.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
20.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.6
331
Tumor
1.3
661
Tumor
1.2
385
Tumor
1.2
957
Tumor
1.1
537
Tumor
1.1
965
Tumor
1.0
525
Tumor
1.0
311
Tumor
0.9
367
Tumor
0.8
533
Tumor
0.8
395
Tumor
0.7
983
Tumor
0.7
191
Tumor
0.7
967
Tumor
0.7
573
Tumor
0.7
567
Tumor
0.7
943
Tumor
0.6
665
Tumor
0.6
951
Tumor
0.6
217
Tumor
0.6
817
Tumor
0.6
724
Normal
0.6
877
Tumor
0.6
1025
Tumor
0.6
851
Tumor
0.6
351
Tumor
0.6
536
Normal
0.6
467
Tumor
0.5
563
Tumor
0.5
617
Tumor
0.5
953
Tumor
0.5
387
Tumor
0.5
671
Tumor
0.5
545
Tumor
0.5
737
Tumor
0.5
1027
Tumor
0.5
815
Tumor
0.5
421
Tumor
0.5
977
Tumor
0.5
727
Tumor
0.5
221
Tumor
0.5
391
Tumor
0.5
1013
Tumor
0.4
285
Tumor
0.4
313
Tumor
0.4
283
Tumor
0.4
425
Tumor
0.4
557
Tumor
0.4
213
Tumor
0.4
721
Tumor
0.4
473
Tumor
0.4
978
Normal
0.4
743
Tumor
0.4
865
Tumor
0.4
355
Tumor
0.4
195
Tumor
0.3
923
Tumor
0.3
192
Normal
0.3
857
Tumor
0.3
968
Normal
0.3
916
Normal
0.3
413
Tumor
0.3
685
Tumor
0.3
492
Normal
0.3
443
Tumor
0.3
493
Tumor
0.3
451
Tumor
0.3
975
Tumor
0.3
113
Tumor
0.3
715
Tumor
0.3
535
Tumor
0.3
433
Tumor
0.3
527
Tumor
0.3
1015
Tumor
0.3
937
Tumor
0.3
444
Normal
0.2
1021
Tumor
0.2
135
Tumor
0.2
411
Tumor
0.2
463
Tumor
0.2
327
Tumor
0.2
127
Tumor
0.2
185
Tumor
0.2
958
Normal
0.2
455
Tumor
0.2
447
Tumor
0.2
257
Tumor
0.2
231
Tumor
0.2
145
Tumor
0.2
524
Normal
0.2
498
Normal
0.2
1041
Tumor
0.2
745
Tumor
0.2
267
Tumor
0.2
716
Normal
0.2
917
Tumor
0.2
361
Tumor
0.2
141
Tumor
0.2
852
Normal
0.1
214
Normal
0.1
672
Normal
0.1
984
Normal
0.1
161
Tumor
0.1
1014
Normal
0.1
297
Tumor
0.1
571
Tumor
0.1
187
Tumor
0.1
558
Normal
0.1
686
Normal
0.1
431
Tumor
0.1
363
Tumor
0.1
497
Tumor
0.1
514
Normal
0.1
517
Tumor
0.1
883
Tumor
0.1
523
Tumor
0.1
786
Normal
0.1
538
Normal
0.1
365
Tumor
0.1
963
Tumor
0.1
415
Tumor
0.1
481
Tumor
0.1
713
Tumor
0.1
223
Tumor
0.1
823
Tumor
0.1
572
Normal
0.1
218
Normal
0.1
697
Tumor
0.1
228
Normal
0.1
814
Normal
0.1
966
Normal
0.1
881
Tumor
0.1
1043
Tumor
0.1
357
Tumor
0.0
137
Tumor
0.0
696
Normal
0.0
924
Normal
0.0
412
Normal
0.0
1022
Normal
0.0
1028
Normal
0.0
356
Normal
0.0
568
Normal
0.0
462
Normal
0.0
435
Tumor
0.0
112
Tumor
0.0
434
Normal
0.0
494
Normal
0.0
777
Tumor
0.0
913
Tumor
0.0
912
Normal
0.0
268
Normal
0.0
1031
Tumor
0.0
1032
Normal
0.0
641
Tumor
0.0
1045
Tumor
0.0
553
Tumor
0.0
278
Normal
0.0
375
Tumor
0.0
698
Normal
0.0
383
Tumor
0.0
921
Tumor
0.0
448
Normal
0.0
344
Normal
0.0
515
Tumor
0.0
277
Tumor
0.0
171
Tumor
0.0
1044
Normal
0.0
491
Tumor
0.0
513
Tumor
0.0
224
Normal
0.0
483
Tumor
0.0
461
Tumor
0.0
873
Tumor
0.0
516
Normal
0.0
616
Normal
0.0
564
Normal
0.0
574
Normal
0.0
976
Normal
0.0
818
Normal
0.0
824
Normal
0.0
384
Normal
0.0
472
Normal
0.0
477
Tumor
-0.1
918
Normal
-0.1
478
Normal
-0.1
353
Tumor
-0.1
546
Normal
-0.1
422
Normal
-0.1
386
Normal
-0.1
471
Tumor
-0.1
482
Normal
-0.1
738
Normal
-0.1
863
Tumor
-0.1
427
Tumor
-0.1
884
Normal
-0.1
314
Normal
-0.1
534
Normal
-0.1
446
Normal
-0.1
312
Normal
-0.1
944
Normal
-0.1
723
Tumor
-0.1
376
Normal
-0.1
364
Normal
-0.1
414
Normal
-0.1
394
Normal
-0.1
526
Normal
-0.1
868
Normal
-0.1
298
Normal
-0.1
1046
Normal
-0.1
861
Tumor
-0.1
188
Normal
-0.1
131
Tumor
-0.1
554
Normal
-0.1
332
Normal
-0.1
785
Tumor
-0.1
636
Normal
-0.1
343
Tumor
-0.1
922
Normal
-0.1
466
Normal
-0.1
432
Normal
-0.1
114
Normal
-0.1
862
Normal
-0.1
741
Tumor
-0.1
925
Tumor
-0.1
286
Normal
-0.1
262
Normal
-0.1
352
Normal
-0.2
227
Tumor
-0.2
858
Normal
-0.2
488
Normal
-0.2
125
Tumor
-0.2
628
Normal
-0.2
816
Normal
-0.2
126
Normal
-0.2
124
Normal
-0.2
664
Normal
-0.2
354
Normal
-0.2
424
Normal
-0.2
393
Tumor
-0.2
728
Normal
-0.2
864
Normal
-0.2
428
Normal
-0.2
396
Normal
-0.2
528
Normal
-0.2
368
Normal
-0.2
416
Normal
-0.2
647
Tumor
-0.2
468
Normal
-0.2
911
Tumor
-0.2
474
Normal
-0.2
964
Normal
-0.2
714
Normal
-0.2
358
Normal
-0.2
722
Normal
-0.2
222
Normal
-0.2
261
Tumor
-0.2
172
Normal
-0.2
695
Tumor
-0.2
981
Tumor
-0.2
954
Normal
-0.2
778
Normal
-0.2
756
Normal
-0.2
755
Tumor
-0.2
212
Normal
-0.2
271
Tumor
-0.2
878
Normal
-0.2
196
Normal
-0.2
938
Normal
-0.2
915
Tumor
-0.2
132
Normal
-0.2
232
Normal
-0.2
1026
Normal
-0.2
258
Normal
-0.2
162
Normal
-0.2
426
Normal
-0.2
328
Normal
-0.2
615
Tumor
-0.2
111
Normal
-0.3
813
Tumor
-0.3
284
Normal
-0.3
867
Tumor
-0.3
436
Normal
-0.3
956
Normal
-0.3
484
Normal
-0.3
366
Normal
-0.3
662
Normal
-0.3
392
Normal
-0.3
1016
Normal
-0.3
1042
Normal
-0.3
341
Tumor
-0.3
272
Normal
-0.3
926
Normal
-0.3
138
Normal
-0.3
362
Normal
-0.3
123
Tumor
-0.3
952
Normal
-0.3
147
Tumor
-0.3
666
Normal
-0.3
487
Tumor
-0.3
128
Normal
-0.3
445
Tumor
-0.3
663
Tumor
-0.3
982
Normal
-0.3
388
Normal
-0.3
342
Normal
-0.3
618
Normal
-0.3
882
Normal
-0.3
136
Normal
-0.3
866
Normal
-0.3
148
Normal
-0.3
142
Normal
-0.3
464
Normal
-0.3
452
Normal
-0.3
874
Normal
-0.4
456
Normal
-0.4
465
Tumor
-0.4
746
Normal
-0.4
518
Normal
-0.4
146
Normal
-0.4
742
Normal
-0.4
955
Tumor
-0.4
914
Normal
-0.4
627
Tumor
-0.4
423
Tumor
-0.4
186
Normal
-0.5
648
Normal
-0.5
642
Normal
-0.5
635
Tumor
-0.5
744
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
