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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SZRD1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
134.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
80.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
76.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
68.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
68.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
60.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
59.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
57.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
56.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
56.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
56.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
55.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
54.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
53.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
53.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
50.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
49.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
48.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
48.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
48.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
47.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
46.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
46.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
45.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
43.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
42.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
42.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
41.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
41.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
41.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
37.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
37.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
36.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
36.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
36.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
35.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
35.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
35.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
34.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
32.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
32.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
31.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
31.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
31.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
31.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
30.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
30.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
30.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
30.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
29.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
29.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
28.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
28.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
27.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
27.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
26.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
25.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
24.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
23.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
22.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
20.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
19.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
19.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
17.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
13.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
12.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
9.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
0.9
283
Tumor
0.9
451
Tumor
0.8
487
Tumor
0.6
513
Tumor
0.6
727
Tumor
0.6
537
Tumor
0.6
661
Tumor
0.5
737
Tumor
0.5
355
Tumor
0.5
663
Tumor
0.5
965
Tumor
0.5
375
Tumor
0.5
492
Normal
0.5
257
Tumor
0.5
425
Tumor
0.5
943
Tumor
0.4
387
Tumor
0.4
958
Normal
0.4
525
Tumor
0.4
571
Tumor
0.4
573
Tumor
0.4
545
Tumor
0.4
515
Tumor
0.4
865
Tumor
0.4
964
Normal
0.3
533
Tumor
0.3
546
Normal
0.3
953
Tumor
0.3
497
Tumor
0.3
714
Normal
0.3
341
Tumor
0.3
642
Normal
0.3
567
Tumor
0.3
327
Tumor
0.3
966
Normal
0.3
395
Tumor
0.3
968
Normal
0.3
463
Tumor
0.3
615
Tumor
0.3
951
Tumor
0.3
698
Normal
0.3
628
Normal
0.3
478
Normal
0.3
741
Tumor
0.3
484
Normal
0.3
852
Normal
0.3
721
Tumor
0.3
755
Tumor
0.3
857
Tumor
0.3
493
Tumor
0.2
528
Normal
0.2
554
Normal
0.2
527
Tumor
0.2
261
Tumor
0.2
716
Normal
0.2
524
Normal
0.2
494
Normal
0.2
616
Normal
0.2
383
Tumor
0.2
963
Tumor
0.2
695
Tumor
0.2
473
Tumor
0.2
861
Tumor
0.2
918
Normal
0.2
724
Normal
0.2
696
Normal
0.2
777
Tumor
0.2
1046
Normal
0.2
357
Tumor
0.2
558
Normal
0.2
516
Normal
0.2
384
Normal
0.2
488
Normal
0.2
498
Normal
0.2
228
Normal
0.2
386
Normal
0.2
882
Normal
0.2
572
Normal
0.2
884
Normal
0.2
141
Tumor
0.2
534
Normal
0.2
125
Tumor
0.2
364
Normal
0.2
391
Tumor
0.2
916
Normal
0.2
212
Normal
0.2
978
Normal
0.2
482
Normal
0.2
286
Normal
0.2
924
Normal
0.2
481
Tumor
0.2
738
Normal
0.2
514
Normal
0.2
211
Tumor
0.2
574
Normal
0.2
976
Normal
0.2
518
Normal
0.2
823
Tumor
0.2
563
Tumor
0.1
568
Normal
0.1
412
Normal
0.1
474
Normal
0.1
298
Normal
0.1
284
Normal
0.1
416
Normal
0.1
365
Tumor
0.1
313
Tumor
0.1
786
Normal
0.1
465
Tumor
0.1
367
Tumor
0.1
723
Tumor
0.1
447
Tumor
0.1
923
Tumor
0.1
627
Tumor
0.1
915
Tumor
0.1
925
Tumor
0.1
137
Tumor
0.1
224
Normal
0.1
491
Tumor
0.1
362
Normal
0.1
312
Normal
0.1
912
Normal
0.1
126
Normal
0.1
217
Tumor
0.1
538
Normal
0.1
1045
Tumor
0.1
127
Tumor
0.1
917
Tumor
0.1
728
Normal
0.1
171
Tumor
0.1
817
Tumor
0.1
278
Normal
0.1
1027
Tumor
0.1
926
Normal
0.1
785
Tumor
0.1
472
Normal
0.1
944
Normal
0.1
557
Tumor
0.1
1032
Normal
0.1
421
Tumor
0.1
422
Normal
0.1
415
Tumor
0.1
954
Normal
0.1
448
Normal
0.1
267
Tumor
0.1
385
Tumor
0.1
967
Tumor
0.1
635
Tumor
0.1
112
Tumor
0.1
686
Normal
0.0
536
Normal
0.0
376
Normal
0.0
858
Normal
0.0
756
Normal
0.0
223
Tumor
0.0
314
Normal
0.0
388
Normal
0.0
937
Tumor
0.0
816
Normal
0.0
332
Normal
0.0
867
Tumor
0.0
394
Normal
0.0
957
Tumor
0.0
742
Normal
0.0
392
Normal
0.0
424
Normal
0.0
161
Tumor
0.0
396
Normal
0.0
745
Tumor
0.0
672
Normal
0.0
1044
Normal
0.0
636
Normal
0.0
483
Tumor
0.0
883
Tumor
0.0
878
Normal
0.0
311
Tumor
0.0
413
Tumor
0.0
444
Normal
0.0
952
Normal
0.0
471
Tumor
0.0
461
Tumor
0.0
665
Tumor
0.0
618
Normal
0.0
526
Normal
0.0
368
Normal
0.0
713
Tumor
0.0
535
Tumor
0.0
814
Normal
0.0
564
Normal
0.0
523
Tumor
0.0
455
Tumor
0.0
213
Tumor
0.0
517
Tumor
0.0
662
Normal
0.0
778
Normal
0.0
285
Tumor
0.0
414
Normal
0.0
938
Normal
0.0
328
Normal
0.0
356
Normal
0.0
1013
Tumor
0.0
162
Normal
0.0
955
Tumor
0.0
868
Normal
0.0
432
Normal
0.0
864
Normal
0.0
366
Normal
0.0
1026
Normal
0.0
142
Normal
0.0
114
Normal
0.0
262
Normal
0.0
648
Normal
0.0
277
Tumor
0.0
1022
Normal
0.0
1015
Tumor
0.0
666
Normal
0.0
423
Tumor
0.0
361
Tumor
0.0
922
Normal
0.0
188
Normal
0.0
146
Normal
-0.1
975
Tumor
-0.1
824
Normal
-0.1
664
Normal
-0.1
641
Tumor
-0.1
746
Normal
-0.1
862
Normal
-0.1
866
Normal
-0.1
462
Normal
-0.1
192
Normal
-0.1
863
Tumor
-0.1
671
Tumor
-0.1
231
Tumor
-0.1
1014
Normal
-0.1
956
Normal
-0.1
851
Tumor
-0.1
697
Tumor
-0.1
874
Normal
-0.1
113
Tumor
-0.1
743
Tumor
-0.1
136
Normal
-0.1
477
Tumor
-0.1
195
Tumor
-0.1
1043
Tumor
-0.1
353
Tumor
-0.1
456
Normal
-0.1
138
Normal
-0.1
147
Tumor
-0.1
914
Normal
-0.1
268
Normal
-0.1
331
Tumor
-0.1
466
Normal
-0.1
232
Normal
-0.1
722
Normal
-0.1
984
Normal
-0.1
744
Normal
-0.1
436
Normal
-0.1
258
Normal
-0.1
128
Normal
-0.1
132
Normal
-0.1
981
Tumor
-0.1
982
Normal
-0.1
445
Tumor
-0.1
911
Tumor
-0.1
1016
Normal
-0.1
881
Tumor
-0.1
426
Normal
-0.1
815
Tumor
-0.1
124
Normal
-0.1
1042
Normal
-0.1
135
Tumor
-0.1
411
Tumor
-0.2
111
Normal
-0.2
428
Normal
-0.2
272
Normal
-0.2
131
Tumor
-0.2
464
Normal
-0.2
452
Normal
-0.2
351
Tumor
-0.2
227
Tumor
-0.2
172
Normal
-0.2
818
Normal
-0.2
983
Tumor
-0.2
647
Tumor
-0.2
222
Normal
-0.2
218
Normal
-0.2
553
Tumor
-0.2
434
Normal
-0.2
196
Normal
-0.2
467
Tumor
-0.2
446
Normal
-0.2
913
Tumor
-0.2
191
Tumor
-0.2
186
Normal
-0.2
297
Tumor
-0.2
1041
Tumor
-0.2
214
Normal
-0.2
921
Tumor
-0.2
187
Tumor
-0.2
685
Tumor
-0.2
148
Normal
-0.2
352
Normal
-0.2
342
Normal
-0.2
1028
Normal
-0.2
431
Tumor
-0.2
435
Tumor
-0.3
358
Normal
-0.3
813
Tumor
-0.3
393
Tumor
-0.3
185
Tumor
-0.3
443
Tumor
-0.3
221
Tumor
-0.3
468
Normal
-0.3
873
Tumor
-0.3
145
Tumor
-0.3
344
Normal
-0.3
123
Tumor
-0.3
363
Tumor
-0.3
354
Normal
-0.3
433
Tumor
-0.3
271
Tumor
-0.4
1021
Tumor
-0.4
343
Tumor
-0.4
427
Tumor
-0.4
1025
Tumor
-0.4
715
Tumor
-0.4
1031
Tumor
-0.5
877
Tumor
-0.5
977
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
