MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA Brain:128.7 nTPM
GTEx:40.9 nTPM
FANTOM5:211.1 Scaled Tags Per Million
Pig:136.7 nTPM
Mouse:88.2 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 128.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 121.0
2586 Male, age 75, left hemisphere 151.5
2019 Male, age 18, unknown 139.9
2828 Female, age 72, unknown 128.3
1833 Male, age 53, unknown 117.8
2411 Female, age 72, unknown 117.3
1827 Male, age 72, unknown 116.9
2219 Male, age 76, both hemispheres 114.5
1830 Male, age 51, unknown 109.7
2666 Male, age 74, left hemisphere 109.2
1870 Female, age 42, unknown 105.2
Dorsal raphe nucleus
nTPM: 112.1
1828 Male, age 53, unknown 133.3
2047 Male, age 72, unknown 114.6
2750 Male, age 76, both hemispheres 110.5
2016 Female, age 72, unknown 102.4
2298 Female, age 72, unknown 99.8
Inferior colliculus
nTPM: 115.7
1890 Male, age 53, unknown 125.1
2097 Female, age 72, unknown 123.3
1848 Female, age 42, unknown 112.0
2849 Male, age 72, unknown 102.4
Median raphe nucleus
nTPM: 101.2
2220 Male, age 76, midline 101.2
Periaquaductal grey, anterior
nTPM: 108.5
2502 Female, age 75, unknown 122.4
1947 Male, age 18, unknown 103.7
1795 Male, age 51, unknown 99.4
Periaquaductal grey, dorsal
nTPM: 92.7
2464 Female, age 72, unknown 107.5
1831 Male, age 72, unknown 96.8
2850 Male, age 76, both hemispheres 83.3
1840 Male, age 53, unknown 83.2
Periaquaductal grey, lateral
nTPM: 91.9
2053 Male, age 18, unknown 97.8
2272 Male, age 74, both hemispheres 90.9
2140 Male, age 76, both hemispheres 87.0
Pretectal area
nTPM: 117.3
1817 Female, age 42, unknown 149.2
1816 Male, age 51, unknown 148.1
1944 Female, age 72, unknown 143.3
2007 Male, age 72, unknown 136.7
1815 Male, age 53, unknown 125.3
2667 Female, age 75, unknown 120.7
2407 Male, age 75, both hemispheres 105.4
2825 Male, age 18, unknown 94.1
2273 Male, age 74, both hemispheres 91.7
2316 Male, age 76, right hemisphere 88.5
2224 Female, age 72, unknown 87.5
Red nucleus
nTPM: 125.0
1821 Female, age 72, unknown 137.4
1865 Male, age 51, unknown 133.6
2785 Male, age 18, unknown 132.4
2588 Male, age 74, left hemisphere 127.5
1954 Female, age 42, unknown 126.0
2227 Male, age 72, unknown 125.6
2823 Male, age 76, right hemisphere 123.8
2769 Male, age 72, unknown 123.3
2503 Female, age 72, unknown 122.1
2584 Male, age 75, left hemisphere 119.8
1904 Male, age 53, unknown 118.7
2725 Female, age 75, unknown 109.5
Substantia nigra
nTPM: 128.7
1916 Female, age 42, unknown 152.0
1941 Male, age 53, unknown 139.3
2665 Male, age 74, both hemispheres 135.1
1851 Male, age 51, unknown 130.3
1889 Female, age 72, unknown 130.1
2583 Male, age 75, right hemisphere 130.0
2241 Male, age 72, unknown 121.6
2590 Female, age 75, unknown 117.4
2699 Male, age 18, unknown 116.6
2409 Female, age 72, unknown 114.7
Superior colliculus
nTPM: 112.3
2087 Female, age 72, unknown 135.0
2664 Male, age 75, both hemispheres 123.8
2261 Male, age 18, unknown 118.9
2668 Female, age 75, unknown 116.8
1913 Female, age 42, unknown 109.9
1995 Male, age 72, unknown 107.0
2587 Male, age 74, left hemisphere 104.0
1895 Male, age 76, right hemisphere 103.3
1796 Male, age 53, unknown 102.3
1839 Male, age 51, unknown 101.5
Ventral tegmental area
nTPM: 115.1
2410 Female, age 72, unknown 130.3
2223 Female, age 72, unknown 128.3
2218 Male, age 76, both hemispheres 117.7
1915 Female, age 42, unknown 110.4
1942 Male, age 51, unknown 107.2
2021 Male, age 53, unknown 96.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 139

Max nTPM: 63.9
Min nTPM: 23.9
Std nTPM: 7.2
Median nTPM: 40.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 63.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 59.0
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 58.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 56.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 53.5
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 53.1
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 53.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 52.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 52.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 211.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.1
FF:10158-103A5 76 years, female 211.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 136.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 116.8
Samples: 4

Max nTPM: 149.1
Min nTPM: 85.6
Sample A Female 107.5
Sample B Female 85.6
Sample C Male 125.0
Sample D Male 149.1
Midbrain
nTPM: 136.7
Samples: 4

Max nTPM: 178.3
Min nTPM: 107.4
Sample A Female 178.3
Sample B Female 117.0
Sample C Male 144.0
Sample D Male 107.4
Periaqueductal gray
nTPM: 116.5
Samples: 3

Max nTPM: 123.6
Min nTPM: 112.4
Sample B Female 123.6
Sample C Male 113.4
Sample D Male 112.4
Superior colliculi
nTPM: 114.4
Samples: 4

Max nTPM: 147.0
Min nTPM: 66.7
Sample A Female 100.4
Sample B Female 66.7
Sample C Male 143.4
Sample D Male 147.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 88.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.2
Samples: 4

Max nTPM: 93.1
Min nTPM: 79.4
Sample A Male 79.4
Sample B Male 88.3
Sample C Female 93.1
Sample D Female 91.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
69527980 Antisense, RP_050421_02_H03, Mouse strain C57BL/6J (56 days, male) 6.5

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