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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBC1D22A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
17.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBC1D22A is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
937
Tumor
0.9
925
Tumor
0.8
443
Tumor
0.6
231
Tumor
0.6
451
Tumor
0.6
635
Tumor
0.6
135
Tumor
0.6
865
Tumor
0.6
223
Tumor
0.6
331
Tumor
0.6
147
Tumor
0.6
815
Tumor
0.5
171
Tumor
0.5
271
Tumor
0.5
913
Tumor
0.5
921
Tumor
0.5
112
Tumor
0.4
641
Tumor
0.4
883
Tumor
0.4
1027
Tumor
0.4
917
Tumor
0.4
473
Tumor
0.4
537
Tumor
0.4
221
Tumor
0.4
455
Tumor
0.4
467
Tumor
0.4
471
Tumor
0.4
421
Tumor
0.4
911
Tumor
0.4
745
Tumor
0.3
493
Tumor
0.3
332
Normal
0.3
951
Tumor
0.3
498
Normal
0.3
1025
Tumor
0.3
343
Tumor
0.3
425
Tumor
0.3
483
Tumor
0.3
257
Tumor
0.3
497
Tumor
0.3
573
Tumor
0.3
743
Tumor
0.3
1031
Tumor
0.3
261
Tumor
0.3
545
Tumor
0.3
487
Tumor
0.3
267
Tumor
0.3
277
Tumor
0.3
724
Normal
0.3
851
Tumor
0.3
553
Tumor
0.3
123
Tumor
0.3
527
Tumor
0.3
395
Tumor
0.3
661
Tumor
0.3
127
Tumor
0.3
341
Tumor
0.3
357
Tumor
0.3
977
Tumor
0.3
113
Tumor
0.3
463
Tumor
0.3
983
Tumor
0.3
873
Tumor
0.3
975
Tumor
0.3
477
Tumor
0.3
881
Tumor
0.2
823
Tumor
0.2
492
Normal
0.2
528
Normal
0.2
358
Normal
0.2
354
Normal
0.2
435
Tumor
0.2
285
Tumor
0.2
185
Tumor
0.2
557
Tumor
0.2
445
Tumor
0.2
715
Tumor
0.2
311
Tumor
0.2
1041
Tumor
0.2
817
Tumor
0.2
567
Tumor
0.2
874
Normal
0.2
525
Tumor
0.2
944
Normal
0.2
737
Tumor
0.2
327
Tumor
0.2
145
Tumor
0.2
1015
Tumor
0.2
617
Tumor
0.2
685
Tumor
0.2
571
Tumor
0.2
1045
Tumor
0.2
1021
Tumor
0.2
224
Normal
0.2
432
Normal
0.2
563
Tumor
0.2
314
Normal
0.2
452
Normal
0.2
538
Normal
0.2
383
Tumor
0.2
447
Tumor
0.2
666
Normal
0.2
862
Normal
0.2
534
Normal
0.2
392
Normal
0.1
434
Normal
0.1
312
Normal
0.1
978
Normal
0.1
217
Tumor
0.1
866
Normal
0.1
297
Tumor
0.1
864
Normal
0.1
958
Normal
0.1
456
Normal
0.1
664
Normal
0.1
213
Tumor
0.1
954
Normal
0.1
713
Tumor
0.1
852
Normal
0.1
868
Normal
0.1
356
Normal
0.1
141
Tumor
0.1
484
Normal
0.1
211
Tumor
0.1
415
Tumor
0.1
444
Normal
0.1
513
Tumor
0.1
286
Normal
0.1
328
Normal
0.1
721
Tumor
0.1
777
Tumor
0.1
558
Normal
0.1
665
Tumor
0.1
662
Normal
0.1
536
Normal
0.1
863
Tumor
0.1
478
Normal
0.1
367
Tumor
0.1
858
Normal
0.1
228
Normal
0.1
353
Tumor
0.1
131
Tumor
0.1
278
Normal
0.1
352
Normal
0.1
344
Normal
0.1
284
Normal
0.1
916
Normal
0.1
172
Normal
0.1
212
Normal
0.1
362
Normal
0.1
283
Tumor
0.1
968
Normal
0.1
466
Normal
0.1
955
Tumor
0.1
965
Tumor
0.1
727
Tumor
0.1
884
Normal
0.1
262
Normal
0.1
1042
Normal
0.1
258
Normal
0.1
546
Normal
0.1
413
Tumor
0.1
363
Tumor
0.1
912
Normal
0.1
878
Normal
0.1
494
Normal
0.1
465
Tumor
0.1
146
Normal
0.1
723
Tumor
0.1
272
Normal
0.1
384
Normal
0.1
427
Tumor
0.1
433
Tumor
0.1
461
Tumor
0.0
964
Normal
0.0
124
Normal
0.0
468
Normal
0.0
488
Normal
0.0
642
Normal
0.0
298
Normal
0.0
533
Tumor
0.0
464
Normal
0.0
915
Tumor
0.0
882
Normal
0.0
672
Normal
0.0
526
Normal
0.0
1046
Normal
0.0
647
Tumor
0.0
857
Tumor
0.0
554
Normal
0.0
957
Tumor
0.0
956
Normal
0.0
663
Tumor
0.0
388
Normal
0.0
981
Tumor
0.0
564
Normal
0.0
615
Tumor
0.0
268
Normal
0.0
138
Normal
0.0
926
Normal
0.0
436
Normal
0.0
162
Normal
0.0
914
Normal
0.0
385
Tumor
0.0
517
Tumor
0.0
574
Normal
0.0
1016
Normal
0.0
481
Tumor
0.0
924
Normal
0.0
966
Normal
0.0
516
Normal
0.0
313
Tumor
0.0
982
Normal
0.0
568
Normal
0.0
1014
Normal
0.0
818
Normal
0.0
125
Tumor
0.0
114
Normal
0.0
446
Normal
0.0
375
Tumor
0.0
424
Normal
0.0
524
Normal
0.0
186
Normal
0.0
351
Tumor
0.0
355
Tumor
0.0
1032
Normal
0.0
572
Normal
0.0
188
Normal
0.0
142
Normal
0.0
648
Normal
0.0
814
Normal
0.0
696
Normal
0.0
953
Tumor
0.0
126
Normal
0.0
967
Tumor
0.0
984
Normal
0.0
232
Normal
0.0
137
Tumor
0.0
738
Normal
0.0
976
Normal
0.0
191
Tumor
0.0
714
Normal
0.0
744
Normal
0.0
342
Normal
0.0
1026
Normal
0.0
686
Normal
0.0
922
Normal
0.0
195
Tumor
0.0
923
Tumor
0.0
627
Tumor
0.0
136
Normal
0.0
963
Tumor
-0.1
943
Tumor
-0.1
448
Normal
-0.1
1022
Normal
-0.1
918
Normal
-0.1
786
Normal
-0.1
695
Tumor
-0.1
192
Normal
-0.1
824
Normal
-0.1
813
Tumor
-0.1
515
Tumor
-0.1
756
Normal
-0.1
368
Normal
-0.1
728
Normal
-0.1
214
Normal
-0.1
778
Normal
-0.1
1028
Normal
-0.1
938
Normal
-0.1
222
Normal
-0.1
482
Normal
-0.1
867
Tumor
-0.1
111
Normal
-0.1
218
Normal
-0.1
716
Normal
-0.1
364
Normal
-0.1
952
Normal
-0.1
412
Normal
-0.1
698
Normal
-0.1
462
Normal
-0.1
518
Normal
-0.1
535
Tumor
-0.1
877
Tumor
-0.1
628
Normal
-0.1
148
Normal
-0.1
514
Normal
-0.1
361
Tumor
-0.1
861
Tumor
-0.1
746
Normal
-0.1
416
Normal
-0.1
618
Normal
-0.1
742
Normal
-0.1
431
Tumor
-0.1
132
Normal
-0.1
671
Tumor
-0.1
414
Normal
-0.1
196
Normal
-0.2
376
Normal
-0.2
366
Normal
-0.2
785
Tumor
-0.2
722
Normal
-0.2
472
Normal
-0.2
128
Normal
-0.2
187
Tumor
-0.2
491
Tumor
-0.2
1044
Normal
-0.2
161
Tumor
-0.2
474
Normal
-0.2
1043
Tumor
-0.2
616
Normal
-0.2
387
Tumor
-0.2
697
Tumor
-0.2
227
Tumor
-0.2
636
Normal
-0.2
386
Normal
-0.2
423
Tumor
-0.2
816
Normal
-0.2
426
Normal
-0.3
422
Normal
-0.3
755
Tumor
-0.3
411
Tumor
-0.3
741
Tumor
-0.3
391
Tumor
-0.3
394
Normal
-0.3
365
Tumor
-0.4
428
Normal
-0.4
393
Tumor
-0.5
523
Tumor
-0.5
396
Normal
-0.5
1013
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
