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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAPPC3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
92.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
90.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
84.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
80.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
78.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
75.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
75.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
75.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
73.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
72.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
72.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
65.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
64.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
64.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
63.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
61.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
61.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
60.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
60.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
60.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
59.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
57.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
57.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
57.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
56.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
53.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
51.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
50.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
49.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
49.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
49.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
49.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
49.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
48.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
48.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
47.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
46.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
46.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
45.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
45.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
45.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
45.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
45.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
44.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
44.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
44.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
44.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
44.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
43.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
42.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
42.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
41.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
41.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
40.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
40.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
40.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
39.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
39.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
39.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
39.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
39.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
38.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
38.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
38.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
37.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
37.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
37.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
37.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
37.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
36.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
36.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
36.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
35.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
34.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
34.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
34.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
34.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
33.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
33.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
33.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
33.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
32.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
32.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
32.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
32.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
32.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
31.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
31.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
31.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
31.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
31.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
30.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
29.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
29.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
29.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
29.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
27.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
27.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
27.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
27.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
27.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
26.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
26.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
26.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
26.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
25.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
25.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
23.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
21.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRAPPC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.1
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
102.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
91.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
78.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
77.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
70.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
68.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
67.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
66.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
65.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
63.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
61.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
61.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
60.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
60.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
58.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
57.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
54.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
54.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
52.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
51.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
51.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
51.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
51.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
49.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
48.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
47.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
44.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
44.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
43.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
43.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
42.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
42.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
42.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
42.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
41.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
39.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
39.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
38.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
37.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
37.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
37.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
37.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
35.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
35.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
35.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
35.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
34.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
34.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
33.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
33.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
32.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
31.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
31.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
30.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
29.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
28.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
28.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
28.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
27.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
24.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
21.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.2
647
Tumor
0.6
491
Tumor
0.6
953
Tumor
0.6
257
Tumor
0.5
533
Tumor
0.5
1021
Tumor
0.5
573
Tumor
0.5
513
Tumor
0.5
745
Tumor
0.5
537
Tumor
0.5
125
Tumor
0.4
851
Tumor
0.4
387
Tumor
0.4
713
Tumor
0.4
277
Tumor
0.4
487
Tumor
0.4
943
Tumor
0.4
911
Tumor
0.4
865
Tumor
0.4
913
Tumor
0.3
411
Tumor
0.3
147
Tumor
0.3
413
Tumor
0.3
536
Normal
0.3
755
Tumor
0.3
327
Tumor
0.3
978
Normal
0.3
393
Tumor
0.3
271
Tumor
0.3
141
Tumor
0.2
923
Tumor
0.2
425
Tumor
0.2
395
Tumor
0.2
471
Tumor
0.2
921
Tumor
0.2
981
Tumor
0.2
663
Tumor
0.2
567
Tumor
0.2
695
Tumor
0.2
916
Normal
0.2
461
Tumor
0.2
737
Tumor
0.2
443
Tumor
0.2
884
Normal
0.2
527
Tumor
0.2
311
Tumor
0.2
965
Tumor
0.2
455
Tumor
0.2
648
Normal
0.2
223
Tumor
0.2
557
Tumor
0.2
777
Tumor
0.2
518
Normal
0.2
925
Tumor
0.2
272
Normal
0.2
467
Tumor
0.2
937
Tumor
0.2
365
Tumor
0.2
635
Tumor
0.2
1027
Tumor
0.2
563
Tumor
0.2
261
Tumor
0.2
738
Normal
0.2
313
Tumor
0.2
661
Tumor
0.2
1016
Normal
0.2
477
Tumor
0.2
355
Tumor
0.1
213
Tumor
0.1
697
Tumor
0.1
514
Normal
0.1
356
Normal
0.1
728
Normal
0.1
451
Tumor
0.1
863
Tumor
0.1
955
Tumor
0.1
917
Tumor
0.1
952
Normal
0.1
861
Tumor
0.1
883
Tumor
0.1
938
Normal
0.1
966
Normal
0.1
474
Normal
0.1
666
Normal
0.1
628
Normal
0.1
421
Tumor
0.1
778
Normal
0.1
824
Normal
0.1
553
Tumor
0.1
915
Tumor
0.1
447
Tumor
0.1
724
Normal
0.1
618
Normal
0.1
211
Tumor
0.1
267
Tumor
0.1
746
Normal
0.1
212
Normal
0.1
478
Normal
0.1
874
Normal
0.1
564
Normal
0.1
545
Tumor
0.1
188
Normal
0.1
868
Normal
0.1
434
Normal
0.1
353
Tumor
0.1
662
Normal
0.1
375
Tumor
0.1
664
Normal
0.1
627
Tumor
0.1
463
Tumor
0.1
145
Tumor
0.1
686
Normal
0.1
135
Tumor
0.1
488
Normal
0.1
492
Normal
0.1
262
Normal
0.1
444
Normal
0.1
924
Normal
0.1
1014
Normal
0.1
958
Normal
0.1
1045
Tumor
0.1
1042
Normal
0.1
852
Normal
0.1
515
Tumor
0.1
494
Normal
0.1
528
Normal
0.1
535
Tumor
0.1
568
Normal
0.1
524
Normal
0.1
472
Normal
0.1
882
Normal
0.1
1043
Tumor
0.1
1025
Tumor
0.1
756
Normal
0.1
416
Normal
0.1
426
Normal
0.1
912
Normal
0.1
558
Normal
0.1
1044
Normal
0.1
137
Tumor
0.1
436
Normal
0.1
414
Normal
0.1
268
Normal
0.1
741
Tumor
0.0
358
Normal
0.0
462
Normal
0.0
362
Normal
0.0
111
Normal
0.0
956
Normal
0.0
864
Normal
0.0
195
Tumor
0.0
424
Normal
0.0
227
Tumor
0.0
1015
Tumor
0.0
126
Normal
0.0
412
Normal
0.0
432
Normal
0.0
922
Normal
0.0
878
Normal
0.0
422
Normal
0.0
481
Tumor
0.0
283
Tumor
0.0
446
Normal
0.0
361
Tumor
0.0
716
Normal
0.0
968
Normal
0.0
196
Normal
0.0
124
Normal
0.0
128
Normal
0.0
445
Tumor
0.0
112
Tumor
0.0
951
Tumor
0.0
866
Normal
0.0
818
Normal
0.0
113
Tumor
0.0
617
Tumor
0.0
357
Tumor
0.0
456
Normal
0.0
161
Tumor
0.0
497
Tumor
0.0
723
Tumor
0.0
427
Tumor
0.0
525
Tumor
0.0
172
Normal
0.0
138
Normal
0.0
214
Normal
0.0
714
Normal
0.0
1032
Normal
0.0
185
Tumor
0.0
1013
Tumor
0.0
448
Normal
0.0
428
Normal
0.0
538
Normal
0.0
222
Normal
0.0
423
Tumor
0.0
1022
Normal
0.0
572
Normal
0.0
148
Normal
0.0
881
Tumor
0.0
785
Tumor
0.0
526
Normal
0.0
391
Tumor
0.0
571
Tumor
0.0
918
Normal
0.0
482
Normal
0.0
258
Normal
0.0
742
Normal
0.0
363
Tumor
0.0
858
Normal
0.0
114
Normal
0.0
433
Tumor
0.0
721
Tumor
0.0
574
Normal
0.0
1031
Tumor
0.0
498
Normal
0.0
1028
Normal
0.0
132
Normal
0.0
484
Normal
0.0
964
Normal
0.0
224
Normal
0.0
431
Tumor
0.0
816
Normal
0.0
616
Normal
0.0
786
Normal
0.0
136
Normal
0.0
926
Normal
0.0
493
Tumor
0.0
162
Normal
0.0
192
Normal
0.0
464
Normal
0.0
672
Normal
0.0
516
Normal
0.0
954
Normal
0.0
982
Normal
0.0
696
Normal
0.0
815
Tumor
0.0
641
Tumor
0.0
698
Normal
0.0
218
Normal
0.0
1026
Normal
0.0
146
Normal
0.0
642
Normal
0.0
142
Normal
0.0
984
Normal
-0.1
814
Normal
-0.1
466
Normal
-0.1
187
Tumor
-0.1
857
Tumor
-0.1
862
Normal
-0.1
468
Normal
-0.1
186
Normal
-0.1
722
Normal
-0.1
1046
Normal
-0.1
977
Tumor
-0.1
342
Normal
-0.1
341
Tumor
-0.1
615
Tumor
-0.1
554
Normal
-0.1
944
Normal
-0.1
344
Normal
-0.1
385
Tumor
-0.1
415
Tumor
-0.1
534
Normal
-0.1
914
Normal
-0.1
384
Normal
-0.1
228
Normal
-0.1
867
Tumor
-0.1
976
Normal
-0.1
386
Normal
-0.1
465
Tumor
-0.1
367
Tumor
-0.1
823
Tumor
-0.1
278
Normal
-0.1
217
Tumor
-0.1
231
Tumor
-0.1
685
Tumor
-0.1
352
Normal
-0.1
483
Tumor
-0.1
328
Normal
-0.1
364
Normal
-0.1
636
Normal
-0.1
232
Normal
-0.1
297
Tumor
-0.1
298
Normal
-0.1
284
Normal
-0.1
817
Tumor
-0.1
312
Normal
-0.1
546
Normal
-0.1
221
Tumor
-0.1
396
Normal
-0.1
343
Tumor
-0.1
383
Tumor
-0.1
332
Normal
-0.1
671
Tumor
-0.1
131
Tumor
-0.1
286
Normal
-0.1
171
Tumor
-0.2
392
Normal
-0.2
967
Tumor
-0.2
366
Normal
-0.2
376
Normal
-0.2
314
Normal
-0.2
727
Tumor
-0.2
388
Normal
-0.2
665
Tumor
-0.2
368
Normal
-0.2
452
Normal
-0.2
975
Tumor
-0.2
1041
Tumor
-0.2
354
Normal
-0.2
523
Tumor
-0.2
285
Tumor
-0.2
813
Tumor
-0.2
394
Normal
-0.2
873
Tumor
-0.2
744
Normal
-0.2
123
Tumor
-0.2
743
Tumor
-0.3
191
Tumor
-0.3
435
Tumor
-0.3
715
Tumor
-0.3
473
Tumor
-0.3
127
Tumor
-0.3
963
Tumor
-0.3
983
Tumor
-0.3
517
Tumor
-0.3
877
Tumor
-0.3
351
Tumor
-0.4
331
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
