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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USE1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
213.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
107.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
93.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
93.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
90.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
89.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
89.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
88.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
85.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
85.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
81.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
81.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
80.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
79.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
76.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
76.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
76.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
70.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
69.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
68.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
66.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
65.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
64.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
62.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
62.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
62.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
62.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
60.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
58.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
57.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
57.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
56.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
56.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
56.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
55.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
54.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
54.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
54.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
53.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
53.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
52.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
52.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
51.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
50.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
50.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
49.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
49.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
48.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
48.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
47.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
47.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
46.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
46.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
46.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
46.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
46.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
46.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
45.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
45.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
44.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
44.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
43.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
43.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
42.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
42.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
42.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
41.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
41.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
41.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
40.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
40.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
40.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
38.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
38.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
38.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
38.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
38.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
38.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
37.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
37.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
37.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
37.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
37.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
36.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
35.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
35.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
34.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
34.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
34.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
34.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
34.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
34.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
34.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
33.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
33.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
32.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
32.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
31.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
31.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
31.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
30.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
30.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
30.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
30.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
30.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
30.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
30.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
29.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
29.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
29.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
28.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
28.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
28.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
27.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
27.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
27.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
27.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
27.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
26.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
26.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
25.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
25.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
24.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
24.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
24.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
22.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USE1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.6
Number of samples
231
Samples
Sample
Description
TPM
DO23508
0 years, female, NA, stage:2, alive, 390 days
83.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
55.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
47.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
46.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
41.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
40.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
40.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
38.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
36.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
35.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
29.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
29.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
26.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
26.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
25.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
24.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
23.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
22.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
19.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
18.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
15.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.1
481
Tumor
0.8
863
Tumor
0.6
527
Tumor
0.6
857
Tumor
0.6
981
Tumor
0.6
915
Tumor
0.6
727
Tumor
0.6
445
Tumor
0.6
785
Tumor
0.5
363
Tumor
0.5
616
Normal
0.5
665
Tumor
0.5
227
Tumor
0.4
922
Normal
0.4
533
Tumor
0.4
261
Tumor
0.4
615
Tumor
0.4
911
Tumor
0.4
913
Tumor
0.4
553
Tumor
0.4
431
Tumor
0.4
267
Tumor
0.4
1027
Tumor
0.4
488
Normal
0.4
1043
Tumor
0.4
955
Tumor
0.4
697
Tumor
0.3
868
Normal
0.3
473
Tumor
0.3
518
Normal
0.3
755
Tumor
0.3
1045
Tumor
0.3
492
Normal
0.3
482
Normal
0.3
918
Normal
0.3
954
Normal
0.3
285
Tumor
0.3
526
Normal
0.3
484
Normal
0.3
466
Normal
0.3
873
Tumor
0.3
571
Tumor
0.3
513
Tumor
0.3
866
Normal
0.3
514
Normal
0.3
984
Normal
0.3
376
Normal
0.3
451
Tumor
0.3
878
Normal
0.3
534
Normal
0.3
864
Normal
0.3
744
Normal
0.3
636
Normal
0.3
741
Tumor
0.3
537
Tumor
0.3
867
Tumor
0.3
546
Normal
0.3
746
Normal
0.3
648
Normal
0.2
212
Normal
0.2
228
Normal
0.2
554
Normal
0.2
353
Tumor
0.2
882
Normal
0.2
468
Normal
0.2
1014
Normal
0.2
635
Tumor
0.2
142
Normal
0.2
968
Normal
0.2
976
Normal
0.2
356
Normal
0.2
963
Tumor
0.2
926
Normal
0.2
815
Tumor
0.2
661
Tumor
0.2
1032
Normal
0.2
435
Tumor
0.2
977
Tumor
0.2
516
Normal
0.2
824
Normal
0.2
786
Normal
0.2
137
Tumor
0.2
462
Normal
0.2
816
Normal
0.2
944
Normal
0.2
528
Normal
0.2
223
Tumor
0.2
618
Normal
0.2
967
Tumor
0.2
1028
Normal
0.2
412
Normal
0.2
938
Normal
0.2
171
Tumor
0.2
572
Normal
0.2
145
Tumor
0.2
128
Normal
0.2
494
Normal
0.2
491
Tumor
0.2
524
Normal
0.2
722
Normal
0.2
422
Normal
0.2
221
Tumor
0.2
472
Normal
0.2
478
Normal
0.2
284
Normal
0.2
698
Normal
0.2
1042
Normal
0.2
964
Normal
0.2
884
Normal
0.2
728
Normal
0.2
415
Tumor
0.2
617
Tumor
0.2
978
Normal
0.2
628
Normal
0.2
952
Normal
0.2
538
Normal
0.2
916
Normal
0.2
568
Normal
0.2
714
Normal
0.2
271
Tumor
0.2
662
Normal
0.2
672
Normal
0.2
424
Normal
0.2
1046
Normal
0.2
738
Normal
0.2
923
Tumor
0.2
352
Normal
0.2
921
Tumor
0.2
232
Normal
0.2
818
Normal
0.2
195
Tumor
0.2
414
Normal
0.1
696
Normal
0.1
666
Normal
0.1
426
Normal
0.1
448
Normal
0.1
852
Normal
0.1
912
Normal
0.1
567
Tumor
0.1
558
Normal
0.1
958
Normal
0.1
357
Tumor
0.1
392
Normal
0.1
862
Normal
0.1
365
Tumor
0.1
286
Normal
0.1
756
Normal
0.1
525
Tumor
0.1
498
Normal
0.1
464
Normal
0.1
686
Normal
0.1
364
Normal
0.1
564
Normal
0.1
362
Normal
0.1
723
Tumor
0.1
1013
Tumor
0.1
642
Normal
0.1
474
Normal
0.1
1016
Normal
0.1
428
Normal
0.1
272
Normal
0.1
685
Tumor
0.1
777
Tumor
0.1
851
Tumor
0.1
924
Normal
0.1
452
Normal
0.1
874
Normal
0.1
455
Tumor
0.1
135
Tumor
0.1
196
Normal
0.1
224
Normal
0.1
1022
Normal
0.1
1044
Normal
0.1
172
Normal
0.1
574
Normal
0.1
493
Tumor
0.1
778
Normal
0.1
557
Tumor
0.1
222
Normal
0.1
436
Normal
0.1
148
Normal
0.1
1015
Tumor
0.1
297
Tumor
0.1
298
Normal
0.1
737
Tumor
0.1
914
Normal
0.1
742
Normal
0.1
342
Normal
0.1
113
Tumor
0.1
328
Normal
0.1
416
Normal
0.1
858
Normal
0.1
354
Normal
0.0
664
Normal
0.0
258
Normal
0.0
861
Tumor
0.0
187
Tumor
0.0
715
Tumor
0.0
982
Normal
0.0
966
Normal
0.0
881
Tumor
0.0
111
Normal
0.0
641
Tumor
0.0
446
Normal
0.0
523
Tumor
0.0
262
Normal
0.0
231
Tumor
0.0
388
Normal
0.0
456
Normal
0.0
463
Tumor
0.0
467
Tumor
0.0
162
Normal
0.0
443
Tumor
0.0
925
Tumor
0.0
218
Normal
0.0
471
Tumor
0.0
387
Tumor
0.0
724
Normal
0.0
361
Tumor
0.0
268
Normal
0.0
132
Normal
0.0
536
Normal
0.0
191
Tumor
0.0
146
Normal
0.0
393
Tumor
0.0
647
Tumor
0.0
311
Tumor
0.0
214
Normal
0.0
211
Tumor
0.0
517
Tumor
0.0
327
Tumor
0.0
975
Tumor
0.0
136
Normal
0.0
716
Normal
0.0
943
Tumor
-0.1
314
Normal
-0.1
114
Normal
-0.1
147
Tumor
-0.1
956
Normal
-0.1
384
Normal
-0.1
444
Normal
-0.1
423
Tumor
-0.1
483
Tumor
-0.1
351
Tumor
-0.1
447
Tumor
-0.1
126
Normal
-0.1
461
Tumor
-0.1
1041
Tumor
-0.1
278
Normal
-0.1
394
Normal
-0.1
283
Tumor
-0.1
358
Normal
-0.1
188
Normal
-0.1
366
Normal
-0.1
186
Normal
-0.1
434
Normal
-0.1
515
Tumor
-0.1
396
Normal
-0.1
124
Normal
-0.1
383
Tumor
-0.1
917
Tumor
-0.1
563
Tumor
-0.1
883
Tumor
-0.1
386
Normal
-0.1
127
Tumor
-0.1
713
Tumor
-0.1
432
Normal
-0.1
391
Tumor
-0.1
368
Normal
-0.1
312
Normal
-0.1
983
Tumor
-0.1
487
Tumor
-0.1
1031
Tumor
-0.1
344
Normal
-0.2
185
Tumor
-0.2
131
Tumor
-0.2
413
Tumor
-0.2
535
Tumor
-0.2
192
Normal
-0.2
138
Normal
-0.2
823
Tumor
-0.2
385
Tumor
-0.2
332
Normal
-0.2
411
Tumor
-0.2
721
Tumor
-0.2
1021
Tumor
-0.2
937
Tumor
-0.2
465
Tumor
-0.2
433
Tumor
-0.2
877
Tumor
-0.2
951
Tumor
-0.2
545
Tumor
-0.2
663
Tumor
-0.2
477
Tumor
-0.2
813
Tumor
-0.2
141
Tumor
-0.2
125
Tumor
-0.2
1026
Normal
-0.2
112
Tumor
-0.2
421
Tumor
-0.2
217
Tumor
-0.3
965
Tumor
-0.3
743
Tumor
-0.3
123
Tumor
-0.3
814
Normal
-0.3
427
Tumor
-0.3
161
Tumor
-0.3
395
Tumor
-0.3
865
Tumor
-0.3
277
Tumor
-0.3
331
Tumor
-0.3
627
Tumor
-0.3
257
Tumor
-0.4
341
Tumor
-0.4
817
Tumor
-0.4
953
Tumor
-0.4
671
Tumor
-0.4
497
Tumor
-0.4
367
Tumor
-0.4
695
Tumor
-0.4
313
Tumor
-0.5
355
Tumor
-0.5
213
Tumor
-0.5
425
Tumor
-0.6
573
Tumor
-0.6
343
Tumor
-0.6
375
Tumor
-0.6
957
Tumor
-0.6
1025
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
