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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOP16 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
103.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
94.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
88.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
85.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
83.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
76.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
75.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
73.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
71.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
65.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
63.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
62.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
61.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
61.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
59.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
58.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
57.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
57.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
56.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
56.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
53.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
52.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
52.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
52.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
50.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
50.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
49.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
49.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
47.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
47.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
47.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
45.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
45.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
44.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
43.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
43.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
42.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
42.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
42.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
41.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
41.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
39.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
39.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
39.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
39.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
38.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
37.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
37.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
36.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
36.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
36.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
35.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
35.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
34.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
33.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
33.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
33.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
33.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
32.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
32.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
31.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
30.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
28.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
28.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
27.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
27.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
27.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
26.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
25.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
25.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
24.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
23.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
21.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
21.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
20.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
19.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
17.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
17.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
16.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
15.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
13.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOP16 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
29.3
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
107.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
107.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
101.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
86.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
78.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
74.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
73.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
72.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
68.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
60.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
55.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
55.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
55.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
55.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
54.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
53.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
53.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
49.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
48.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
47.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
46.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
44.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
44.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
43.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
42.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
42.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
42.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
41.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
40.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
39.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
37.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
37.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
37.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
36.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
36.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
35.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
34.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
34.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
31.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
31.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
30.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
29.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
28.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
26.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
18.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
18.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.5
473
Tumor
1.4
331
Tumor
1.3
567
Tumor
1.3
353
Tumor
1.2
395
Tumor
1.2
537
Tumor
1.2
351
Tumor
1.1
685
Tumor
1.0
227
Tumor
0.9
285
Tumor
0.9
1041
Tumor
0.8
223
Tumor
0.8
427
Tumor
0.8
861
Tumor
0.8
267
Tumor
0.7
865
Tumor
0.7
213
Tumor
0.7
671
Tumor
0.7
387
Tumor
0.7
743
Tumor
0.7
123
Tumor
0.7
951
Tumor
0.6
965
Tumor
0.6
483
Tumor
0.6
261
Tumor
0.6
1025
Tumor
0.6
467
Tumor
0.6
187
Tumor
0.6
327
Tumor
0.5
533
Tumor
0.5
517
Tumor
0.5
513
Tumor
0.5
211
Tumor
0.5
983
Tumor
0.5
571
Tumor
0.5
385
Tumor
0.4
525
Tumor
0.4
851
Tumor
0.4
617
Tumor
0.4
545
Tumor
0.4
661
Tumor
0.4
367
Tumor
0.4
413
Tumor
0.4
527
Tumor
0.4
493
Tumor
0.4
913
Tumor
0.4
523
Tumor
0.4
497
Tumor
0.4
635
Tumor
0.4
355
Tumor
0.3
1031
Tumor
0.3
953
Tumor
0.3
113
Tumor
0.3
957
Tumor
0.3
1013
Tumor
0.3
375
Tumor
0.3
191
Tumor
0.3
665
Tumor
0.3
1027
Tumor
0.3
383
Tumor
0.3
535
Tumor
0.3
967
Tumor
0.3
471
Tumor
0.2
817
Tumor
0.2
823
Tumor
0.2
1021
Tumor
0.2
431
Tumor
0.2
641
Tumor
0.2
363
Tumor
0.2
697
Tumor
0.2
171
Tumor
0.2
231
Tumor
0.2
195
Tumor
0.2
881
Tumor
0.2
755
Tumor
0.2
393
Tumor
0.1
433
Tumor
0.1
745
Tumor
0.1
785
Tumor
0.1
221
Tumor
0.1
257
Tumor
0.1
724
Normal
0.1
411
Tumor
0.1
131
Tumor
0.1
877
Tumor
0.1
615
Tumor
0.1
145
Tumor
0.1
715
Tumor
0.1
963
Tumor
0.1
361
Tumor
0.1
883
Tumor
0.1
443
Tumor
0.1
727
Tumor
0.1
447
Tumor
0.1
423
Tumor
0.1
627
Tumor
0.1
391
Tumor
0.1
873
Tumor
0.1
573
Tumor
0.0
553
Tumor
0.0
867
Tumor
0.0
911
Tumor
0.0
217
Tumor
0.0
937
Tumor
0.0
515
Tumor
0.0
311
Tumor
0.0
737
Tumor
0.0
185
Tumor
0.0
815
Tumor
0.0
484
Normal
0.0
524
Normal
0.0
161
Tumor
0.0
344
Normal
0.0
1045
Tumor
0.0
135
Tumor
0.0
663
Tumor
0.0
461
Tumor
0.0
857
Tumor
-0.1
814
Normal
-0.1
516
Normal
-0.1
342
Normal
-0.1
756
Normal
-0.1
721
Tumor
-0.1
487
Tumor
-0.1
466
Normal
-0.1
824
Normal
-0.1
451
Tumor
-0.1
481
Tumor
-0.1
534
Normal
-0.1
944
Normal
-0.1
1028
Normal
-0.1
698
Normal
-0.1
1015
Tumor
-0.1
1046
Normal
-0.1
462
Normal
-0.1
975
Tumor
-0.1
1032
Normal
-0.1
357
Tumor
-0.1
664
Normal
-0.1
477
Tumor
-0.1
278
Normal
-0.1
852
Normal
-0.1
283
Tumor
-0.1
384
Normal
-0.1
741
Tumor
-0.1
964
Normal
-0.1
494
Normal
-0.1
415
Tumor
-0.1
488
Normal
-0.1
352
Normal
-0.1
214
Normal
-0.1
127
Tumor
-0.1
498
Normal
-0.1
958
Normal
-0.1
297
Tumor
-0.1
858
Normal
-0.1
1044
Normal
-0.1
616
Normal
-0.1
218
Normal
-0.1
546
Normal
-0.1
478
Normal
-0.2
563
Tumor
-0.2
222
Normal
-0.2
492
Normal
-0.2
818
Normal
-0.2
955
Tumor
-0.2
328
Normal
-0.2
925
Tumor
-0.2
425
Tumor
-0.2
448
Normal
-0.2
446
Normal
-0.2
445
Tumor
-0.2
455
Tumor
-0.2
137
Tumor
-0.2
435
Tumor
-0.2
147
Tumor
-0.2
572
Normal
-0.2
172
Normal
-0.2
196
Normal
-0.2
648
Normal
-0.2
954
Normal
-0.2
474
Normal
-0.2
536
Normal
-0.2
472
Normal
-0.2
362
Normal
-0.2
482
Normal
-0.2
564
Normal
-0.2
376
Normal
-0.2
148
Normal
-0.2
514
Normal
-0.2
976
Normal
-0.2
1014
Normal
-0.2
882
Normal
-0.2
232
Normal
-0.2
968
Normal
-0.2
943
Tumor
-0.2
186
Normal
-0.2
878
Normal
-0.2
966
Normal
-0.2
162
Normal
-0.2
364
Normal
-0.2
977
Tumor
-0.2
354
Normal
-0.2
358
Normal
-0.2
422
Normal
-0.2
696
Normal
-0.2
284
Normal
-0.2
636
Normal
-0.2
744
Normal
-0.2
672
Normal
-0.2
952
Normal
-0.2
981
Tumor
-0.2
356
Normal
-0.2
518
Normal
-0.2
188
Normal
-0.2
526
Normal
-0.2
666
Normal
-0.2
912
Normal
-0.2
628
Normal
-0.2
412
Normal
-0.2
554
Normal
-0.2
1042
Normal
-0.2
421
Tumor
-0.2
444
Normal
-0.2
368
Normal
-0.2
777
Tumor
-0.2
1022
Normal
-0.2
192
Normal
-0.2
722
Normal
-0.2
923
Tumor
-0.3
558
Normal
-0.3
738
Normal
-0.3
1026
Normal
-0.3
713
Tumor
-0.3
436
Normal
-0.3
538
Normal
-0.3
786
Normal
-0.3
742
Normal
-0.3
568
Normal
-0.3
392
Normal
-0.3
298
Normal
-0.3
228
Normal
-0.3
314
Normal
-0.3
938
Normal
-0.3
574
Normal
-0.3
141
Tumor
-0.3
468
Normal
-0.3
864
Normal
-0.3
271
Tumor
-0.3
984
Normal
-0.3
491
Tumor
-0.3
956
Normal
-0.3
662
Normal
-0.3
313
Tumor
-0.3
366
Normal
-0.3
618
Normal
-0.3
813
Tumor
-0.3
714
Normal
-0.3
464
Normal
-0.3
365
Tumor
-0.3
686
Normal
-0.3
343
Tumor
-0.3
1016
Normal
-0.3
416
Normal
-0.3
394
Normal
-0.3
414
Normal
-0.3
212
Normal
-0.3
647
Tumor
-0.3
746
Normal
-0.3
434
Normal
-0.3
866
Normal
-0.3
286
Normal
-0.3
465
Tumor
-0.3
341
Tumor
-0.3
816
Normal
-0.3
862
Normal
-0.4
432
Normal
-0.4
388
Normal
-0.4
132
Normal
-0.4
868
Normal
-0.4
424
Normal
-0.4
723
Tumor
-0.4
277
Tumor
-0.4
312
Normal
-0.4
128
Normal
-0.4
426
Normal
-0.4
452
Normal
-0.4
874
Normal
-0.4
778
Normal
-0.4
332
Normal
-0.4
224
Normal
-0.4
716
Normal
-0.4
528
Normal
-0.4
386
Normal
-0.4
262
Normal
-0.4
396
Normal
-0.4
142
Normal
-0.4
428
Normal
-0.5
124
Normal
-0.5
114
Normal
-0.5
728
Normal
-0.5
126
Normal
-0.5
136
Normal
-0.5
884
Normal
-0.5
914
Normal
-0.5
982
Normal
-0.5
146
Normal
-0.5
138
Normal
-0.5
642
Normal
-0.5
695
Tumor
-0.5
978
Normal
-0.5
1043
Tumor
-0.5
112
Tumor
-0.5
456
Normal
-0.5
258
Normal
-0.5
915
Tumor
-0.6
463
Tumor
-0.6
111
Normal
-0.6
268
Normal
-0.6
272
Normal
-0.6
922
Normal
-0.8
863
Tumor
-0.8
125
Tumor
-0.9
924
Normal
-0.9
917
Tumor
-0.9
918
Normal
-0.9
926
Normal
-1.0
916
Normal
-1.0
921
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
