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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAU2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
41.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
32.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
24.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
24.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
22.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
21.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
21.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
21.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STAU2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
20.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
18.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
5.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
557
Tumor
1.1
663
Tumor
1.1
965
Tumor
1.0
865
Tumor
1.0
285
Tumor
1.0
473
Tumor
0.9
537
Tumor
0.9
171
Tumor
0.8
185
Tumor
0.8
1041
Tumor
0.8
967
Tumor
0.8
641
Tumor
0.8
745
Tumor
0.7
231
Tumor
0.7
1025
Tumor
0.7
957
Tumor
0.7
497
Tumor
0.7
567
Tumor
0.7
925
Tumor
0.7
267
Tumor
0.7
443
Tumor
0.6
257
Tumor
0.6
823
Tumor
0.6
937
Tumor
0.6
471
Tumor
0.6
915
Tumor
0.6
685
Tumor
0.6
743
Tumor
0.5
921
Tumor
0.5
533
Tumor
0.5
147
Tumor
0.5
313
Tumor
0.5
737
Tumor
0.5
351
Tumor
0.5
715
Tumor
0.5
123
Tumor
0.5
421
Tumor
0.5
815
Tumor
0.4
545
Tumor
0.4
463
Tumor
0.4
1013
Tumor
0.4
135
Tumor
0.4
877
Tumor
0.4
385
Tumor
0.4
883
Tumor
0.4
483
Tumor
0.4
112
Tumor
0.4
515
Tumor
0.4
131
Tumor
0.4
923
Tumor
0.4
951
Tumor
0.4
487
Tumor
0.3
851
Tumor
0.3
727
Tumor
0.3
963
Tumor
0.3
661
Tumor
0.3
127
Tumor
0.3
817
Tumor
0.3
221
Tumor
0.3
493
Tumor
0.3
983
Tumor
0.3
881
Tumor
0.3
367
Tumor
0.3
517
Tumor
0.3
861
Tumor
0.3
435
Tumor
0.3
375
Tumor
0.3
635
Tumor
0.3
1043
Tumor
0.3
451
Tumor
0.3
477
Tumor
0.2
617
Tumor
0.2
525
Tumor
0.2
461
Tumor
0.2
513
Tumor
0.2
911
Tumor
0.2
553
Tumor
0.2
277
Tumor
0.2
145
Tumor
0.2
341
Tumor
0.2
523
Tumor
0.2
125
Tumor
0.2
665
Tumor
0.2
187
Tumor
0.2
427
Tumor
0.2
141
Tumor
0.2
873
Tumor
0.1
445
Tumor
0.1
981
Tumor
0.1
387
Tumor
0.1
571
Tumor
0.1
943
Tumor
0.1
161
Tumor
0.1
223
Tumor
0.1
283
Tumor
0.1
867
Tumor
0.1
535
Tumor
0.1
1031
Tumor
0.1
1021
Tumor
0.1
671
Tumor
0.1
977
Tumor
0.1
271
Tumor
0.1
724
Normal
0.1
975
Tumor
0.1
1015
Tumor
0.1
425
Tumor
0.1
913
Tumor
0.1
455
Tumor
0.1
261
Tumor
0.0
697
Tumor
0.0
721
Tumor
0.0
363
Tumor
0.0
357
Tumor
0.0
1027
Tumor
0.0
527
Tumor
0.0
391
Tumor
0.0
423
Tumor
0.0
433
Tumor
0.0
1045
Tumor
0.0
343
Tumor
0.0
353
Tumor
0.0
297
Tumor
0.0
863
Tumor
0.0
355
Tumor
0.0
518
Normal
-0.1
857
Tumor
-0.1
528
Normal
-0.1
514
Normal
-0.1
534
Normal
-0.1
481
Tumor
-0.1
467
Tumor
-0.1
491
Tumor
-0.1
615
Tumor
-0.1
327
Tumor
-0.1
113
Tumor
-0.1
978
Normal
-0.1
916
Normal
-0.1
415
Tumor
-0.1
311
Tumor
-0.1
918
Normal
-0.1
926
Normal
-0.1
524
Normal
-0.1
864
Normal
-0.1
361
Tumor
-0.1
955
Tumor
-0.1
331
Tumor
-0.1
862
Normal
-0.1
563
Tumor
-0.1
866
Normal
-0.1
958
Normal
-0.1
142
Normal
-0.1
191
Tumor
-0.1
912
Normal
-0.1
546
Normal
-0.1
785
Tumor
-0.1
411
Tumor
-0.2
1042
Normal
-0.2
1016
Normal
-0.2
413
Tumor
-0.2
964
Normal
-0.2
741
Tumor
-0.2
616
Normal
-0.2
868
Normal
-0.2
628
Normal
-0.2
213
Tumor
-0.2
573
Tumor
-0.2
484
Normal
-0.2
554
Normal
-0.2
982
Normal
-0.2
494
Normal
-0.2
627
Tumor
-0.2
314
Normal
-0.2
1044
Normal
-0.2
436
Normal
-0.2
922
Normal
-0.2
365
Tumor
-0.2
516
Normal
-0.2
713
Tumor
-0.2
755
Tumor
-0.2
488
Normal
-0.2
884
Normal
-0.2
286
Normal
-0.2
356
Normal
-0.2
526
Normal
-0.2
777
Tumor
-0.2
448
Normal
-0.2
966
Normal
-0.2
696
Normal
-0.2
636
Normal
-0.2
284
Normal
-0.2
137
Tumor
-0.2
1046
Normal
-0.2
136
Normal
-0.2
217
Tumor
-0.2
882
Normal
-0.2
746
Normal
-0.2
874
Normal
-0.3
1026
Normal
-0.3
648
Normal
-0.3
212
Normal
-0.3
138
Normal
-0.3
984
Normal
-0.3
227
Tumor
-0.3
917
Tumor
-0.3
728
Normal
-0.3
742
Normal
-0.3
186
Normal
-0.3
1032
Normal
-0.3
447
Tumor
-0.3
214
Normal
-0.3
228
Normal
-0.3
786
Normal
-0.3
738
Normal
-0.3
465
Tumor
-0.3
132
Normal
-0.3
364
Normal
-0.3
858
Normal
-0.3
852
Normal
-0.3
196
Normal
-0.3
695
Tumor
-0.3
211
Tumor
-0.3
698
Normal
-0.3
1014
Normal
-0.3
328
Normal
-0.3
482
Normal
-0.3
568
Normal
-0.3
618
Normal
-0.3
664
Normal
-0.3
492
Normal
-0.3
716
Normal
-0.3
416
Normal
-0.3
172
Normal
-0.3
434
Normal
-0.3
162
Normal
-0.3
878
Normal
-0.3
1022
Normal
-0.3
224
Normal
-0.3
944
Normal
-0.3
192
Normal
-0.3
924
Normal
-0.3
938
Normal
-0.3
824
Normal
-0.3
222
Normal
-0.3
956
Normal
-0.3
472
Normal
-0.3
756
Normal
-0.3
968
Normal
-0.3
446
Normal
-0.3
723
Tumor
-0.3
232
Normal
-0.3
498
Normal
-0.3
952
Normal
-0.3
278
Normal
-0.3
666
Normal
-0.3
412
Normal
-0.3
722
Normal
-0.3
474
Normal
-0.3
395
Tumor
-0.3
424
Normal
-0.3
572
Normal
-0.3
538
Normal
-0.3
814
Normal
-0.3
536
Normal
-0.3
195
Tumor
-0.4
647
Tumor
-0.4
672
Normal
-0.4
662
Normal
-0.4
432
Normal
-0.4
1028
Normal
-0.4
422
Normal
-0.4
558
Normal
-0.4
354
Normal
-0.4
148
Normal
-0.4
393
Tumor
-0.4
218
Normal
-0.4
111
Normal
-0.4
642
Normal
-0.4
414
Normal
-0.4
262
Normal
-0.4
564
Normal
-0.4
444
Normal
-0.4
714
Normal
-0.4
574
Normal
-0.4
128
Normal
-0.4
272
Normal
-0.4
428
Normal
-0.4
431
Tumor
-0.4
462
Normal
-0.4
818
Normal
-0.4
778
Normal
-0.4
464
Normal
-0.4
146
Normal
-0.4
466
Normal
-0.4
478
Normal
-0.4
816
Normal
-0.4
362
Normal
-0.4
686
Normal
-0.4
383
Tumor
-0.4
332
Normal
-0.4
813
Tumor
-0.4
456
Normal
-0.4
914
Normal
-0.4
188
Normal
-0.4
358
Normal
-0.4
953
Tumor
-0.4
426
Normal
-0.4
258
Normal
-0.4
744
Normal
-0.5
312
Normal
-0.5
114
Normal
-0.5
298
Normal
-0.5
976
Normal
-0.5
384
Normal
-0.5
344
Normal
-0.5
392
Normal
-0.5
124
Normal
-0.5
386
Normal
-0.5
468
Normal
-0.5
388
Normal
-0.5
126
Normal
-0.5
954
Normal
-0.5
396
Normal
-0.5
268
Normal
-0.5
366
Normal
-0.6
394
Normal
-0.6
376
Normal
-0.6
352
Normal
-0.6
368
Normal
-0.6
452
Normal
-0.6
342
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
