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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PNKP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
54.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
43.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
35.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
33.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
30.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
27.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
25.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
25.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
23.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
18.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
17.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
16.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PNKP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
49.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
34.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
24.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
1.3
635
Tumor
1.2
425
Tumor
1.1
463
Tumor
1.0
285
Tumor
1.0
661
Tumor
0.9
431
Tumor
0.8
393
Tumor
0.8
443
Tumor
0.7
647
Tumor
0.7
221
Tumor
0.7
937
Tumor
0.7
161
Tumor
0.6
567
Tumor
0.6
357
Tumor
0.6
865
Tumor
0.5
331
Tumor
0.5
671
Tumor
0.5
277
Tumor
0.5
141
Tumor
0.5
413
Tumor
0.5
545
Tumor
0.5
283
Tumor
0.5
967
Tumor
0.5
125
Tumor
0.5
223
Tumor
0.5
473
Tumor
0.5
455
Tumor
0.4
297
Tumor
0.4
877
Tumor
0.4
385
Tumor
0.4
112
Tumor
0.4
361
Tumor
0.4
231
Tumor
0.4
815
Tumor
0.4
497
Tumor
0.4
665
Tumor
0.3
257
Tumor
0.3
363
Tumor
0.3
517
Tumor
0.3
421
Tumor
0.3
921
Tumor
0.3
185
Tumor
0.3
211
Tumor
0.3
351
Tumor
0.3
435
Tumor
0.3
1031
Tumor
0.3
353
Tumor
0.3
737
Tumor
0.3
395
Tumor
0.2
881
Tumor
0.2
343
Tumor
0.2
1021
Tumor
0.2
467
Tumor
0.2
387
Tumor
0.2
533
Tumor
0.2
741
Tumor
0.2
267
Tumor
0.2
755
Tumor
0.2
137
Tumor
0.2
271
Tumor
0.2
213
Tumor
0.2
113
Tumor
0.2
663
Tumor
0.2
553
Tumor
0.2
571
Tumor
0.2
873
Tumor
0.2
135
Tumor
0.2
523
Tumor
0.2
745
Tumor
0.1
127
Tumor
0.1
433
Tumor
0.1
261
Tumor
0.1
427
Tumor
0.1
132
Normal
0.1
863
Tumor
0.1
538
Normal
0.1
743
Tumor
0.1
367
Tumor
0.1
342
Normal
0.1
423
Tumor
0.1
568
Normal
0.1
332
Normal
0.1
943
Tumor
0.1
851
Tumor
0.1
191
Tumor
0.1
426
Normal
0.0
975
Tumor
0.0
146
Normal
0.0
384
Normal
0.0
715
Tumor
0.0
422
Normal
0.0
434
Normal
0.0
192
Normal
0.0
311
Tumor
0.0
537
Tumor
0.0
481
Tumor
0.0
641
Tumor
0.0
727
Tumor
0.0
352
Normal
0.0
1015
Tumor
0.0
884
Normal
0.0
477
Tumor
0.0
574
Normal
0.0
414
Normal
0.0
424
Normal
0.0
615
Tumor
0.0
187
Tumor
0.0
227
Tumor
0.0
814
Normal
0.0
563
Tumor
0.0
957
Tumor
0.0
415
Tumor
0.0
136
Normal
0.0
298
Normal
0.0
744
Normal
0.0
186
Normal
0.0
358
Normal
0.0
428
Normal
0.0
446
Normal
0.0
383
Tumor
0.0
911
Tumor
0.0
513
Tumor
0.0
527
Tumor
0.0
195
Tumor
0.0
1045
Tumor
0.0
313
Tumor
0.0
272
Normal
0.0
447
Tumor
0.0
697
Tumor
0.0
145
Tumor
0.0
456
Normal
0.0
147
Tumor
0.0
411
Tumor
0.0
785
Tumor
0.0
392
Normal
-0.1
364
Normal
-0.1
436
Normal
-0.1
312
Normal
-0.1
564
Normal
-0.1
1025
Tumor
-0.1
344
Normal
-0.1
258
Normal
-0.1
648
Normal
-0.1
262
Normal
-0.1
917
Tumor
-0.1
138
Normal
-0.1
172
Normal
-0.1
983
Tumor
-0.1
666
Normal
-0.1
376
Normal
-0.1
883
Tumor
-0.1
354
Normal
-0.1
878
Normal
-0.1
268
Normal
-0.1
444
Normal
-0.1
314
Normal
-0.1
912
Normal
-0.1
558
Normal
-0.1
142
Normal
-0.1
672
Normal
-0.1
862
Normal
-0.1
114
Normal
-0.1
823
Tumor
-0.1
696
Normal
-0.1
365
Tumor
-0.1
914
Normal
-0.1
375
Tumor
-0.1
391
Tumor
-0.1
742
Normal
-0.1
362
Normal
-0.1
984
Normal
-0.1
938
Normal
-0.1
573
Tumor
-0.1
536
Normal
-0.1
1013
Tumor
-0.1
432
Normal
-0.1
628
Normal
-0.1
131
Tumor
-0.1
818
Normal
-0.1
445
Tumor
-0.1
162
Normal
-0.1
468
Normal
-0.1
858
Normal
-0.1
864
Normal
-0.1
923
Tumor
-0.1
824
Normal
-0.1
662
Normal
-0.1
126
Normal
-0.1
954
Normal
-0.1
861
Tumor
-0.1
642
Normal
-0.1
451
Tumor
-0.1
498
Normal
-0.1
386
Normal
-0.1
817
Tumor
-0.1
857
Tumor
-0.1
1016
Normal
-0.1
1046
Normal
-0.1
171
Tumor
-0.1
534
Normal
-0.1
572
Normal
-0.1
355
Tumor
-0.1
778
Normal
-0.2
464
Normal
-0.2
868
Normal
-0.2
913
Tumor
-0.2
515
Tumor
-0.2
482
Normal
-0.2
866
Normal
-0.2
698
Normal
-0.2
716
Normal
-0.2
278
Normal
-0.2
123
Tumor
-0.2
228
Normal
-0.2
466
Normal
-0.2
328
Normal
-0.2
722
Normal
-0.2
965
Tumor
-0.2
964
Normal
-0.2
746
Normal
-0.2
356
Normal
-0.2
217
Tumor
-0.2
915
Tumor
-0.2
813
Tumor
-0.2
956
Normal
-0.2
416
Normal
-0.2
557
Tumor
-0.2
222
Normal
-0.2
491
Tumor
-0.2
196
Normal
-0.2
882
Normal
-0.2
526
Normal
-0.2
944
Normal
-0.2
664
Normal
-0.2
224
Normal
-0.2
396
Normal
-0.2
214
Normal
-0.2
723
Tumor
-0.2
1044
Normal
-0.2
978
Normal
-0.2
232
Normal
-0.2
926
Normal
-0.2
474
Normal
-0.2
394
Normal
-0.2
874
Normal
-0.2
955
Tumor
-0.2
284
Normal
-0.2
188
Normal
-0.2
148
Normal
-0.2
412
Normal
-0.2
728
Normal
-0.2
636
Normal
-0.2
686
Normal
-0.2
448
Normal
-0.2
535
Tumor
-0.2
478
Normal
-0.2
724
Normal
-0.2
472
Normal
-0.2
922
Normal
-0.3
546
Normal
-0.3
695
Tumor
-0.3
924
Normal
-0.3
981
Tumor
-0.3
111
Normal
-0.3
366
Normal
-0.3
952
Normal
-0.3
756
Normal
-0.3
487
Tumor
-0.3
286
Normal
-0.3
528
Normal
-0.3
721
Tumor
-0.3
966
Normal
-0.3
953
Tumor
-0.3
471
Tumor
-0.3
958
Normal
-0.3
816
Normal
-0.3
483
Tumor
-0.3
968
Normal
-0.3
368
Normal
-0.3
388
Normal
-0.3
1041
Tumor
-0.3
327
Tumor
-0.3
124
Normal
-0.3
616
Normal
-0.3
916
Normal
-0.3
514
Normal
-0.3
714
Normal
-0.3
976
Normal
-0.3
1027
Tumor
-0.3
1022
Normal
-0.3
212
Normal
-0.3
488
Normal
-0.3
493
Tumor
-0.3
518
Normal
-0.3
786
Normal
-0.3
461
Tumor
-0.3
1014
Normal
-0.3
963
Tumor
-0.3
218
Normal
-0.3
951
Tumor
-0.3
713
Tumor
-0.3
1043
Tumor
-0.3
492
Normal
-0.4
128
Normal
-0.4
852
Normal
-0.4
982
Normal
-0.4
977
Tumor
-0.4
918
Normal
-0.4
867
Tumor
-0.4
554
Normal
-0.4
1042
Normal
-0.4
618
Normal
-0.4
525
Tumor
-0.4
462
Normal
-0.4
452
Normal
-0.4
777
Tumor
-0.4
1032
Normal
-0.4
465
Tumor
-0.4
627
Tumor
-0.4
738
Normal
-0.4
516
Normal
-0.4
1026
Normal
-0.4
1028
Normal
-0.4
494
Normal
-0.5
617
Tumor
-0.5
685
Tumor
-0.5
524
Normal
-0.5
484
Normal
-0.5
925
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
