MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:29.4 nTPM
GTEx:12.2 nTPM
FANTOM5:41.0 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:39.7 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
2019 Male, age 18, unknown 28.0
2219 Male, age 76, both hemispheres 27.3
1827 Male, age 72, unknown 26.0
2666 Male, age 74, left hemisphere 26.0
1870 Female, age 42, unknown 24.3
2411 Female, age 72, unknown 24.1
1833 Male, age 53, unknown 21.9
2586 Male, age 75, left hemisphere 21.4
1830 Male, age 51, unknown 21.0
2828 Female, age 72, unknown 20.1
Dorsal raphe nucleus
nTPM: 21.6
2298 Female, age 72, unknown 25.2
1828 Male, age 53, unknown 21.9
2047 Male, age 72, unknown 21.1
2750 Male, age 76, both hemispheres 20.4
2016 Female, age 72, unknown 19.7
Inferior colliculus
nTPM: 25.1
2097 Female, age 72, unknown 30.6
1848 Female, age 42, unknown 24.1
1890 Male, age 53, unknown 23.2
2849 Male, age 72, unknown 22.5
Median raphe nucleus
nTPM: 24.7
2220 Male, age 76, midline 24.7
Periaquaductal grey, anterior
nTPM: 24.3
1795 Male, age 51, unknown 25.0
2502 Female, age 75, unknown 24.4
1947 Male, age 18, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 22.8
1840 Male, age 53, unknown 25.5
1831 Male, age 72, unknown 23.7
2850 Male, age 76, both hemispheres 21.7
2464 Female, age 72, unknown 20.4
Periaquaductal grey, lateral
nTPM: 21.6
2053 Male, age 18, unknown 23.5
2272 Male, age 74, both hemispheres 21.1
2140 Male, age 76, both hemispheres 20.2
Pretectal area
nTPM: 27.9
1944 Female, age 72, unknown 40.8
1816 Male, age 51, unknown 36.9
2007 Male, age 72, unknown 32.8
1817 Female, age 42, unknown 32.4
1815 Male, age 53, unknown 29.8
2667 Female, age 75, unknown 27.6
2224 Female, age 72, unknown 25.8
2273 Male, age 74, both hemispheres 22.6
2825 Male, age 18, unknown 20.8
2407 Male, age 75, both hemispheres 18.9
2316 Male, age 76, right hemisphere 18.8
Red nucleus
nTPM: 24.7
1821 Female, age 72, unknown 30.0
2785 Male, age 18, unknown 26.8
1904 Male, age 53, unknown 26.2
2503 Female, age 72, unknown 25.3
1954 Female, age 42, unknown 25.1
1865 Male, age 51, unknown 24.6
2588 Male, age 74, left hemisphere 24.1
2725 Female, age 75, unknown 24.0
2227 Male, age 72, unknown 22.9
2823 Male, age 76, right hemisphere 22.7
2584 Male, age 75, left hemisphere 22.3
2769 Male, age 72, unknown 22.0
Substantia nigra
nTPM: 29.4
2409 Female, age 72, unknown 36.1
1916 Female, age 42, unknown 33.0
1889 Female, age 72, unknown 32.3
2241 Male, age 72, unknown 31.8
1941 Male, age 53, unknown 31.3
2665 Male, age 74, both hemispheres 28.4
1851 Male, age 51, unknown 28.2
2583 Male, age 75, right hemisphere 25.9
2699 Male, age 18, unknown 24.4
2590 Female, age 75, unknown 22.4
Superior colliculus
nTPM: 25.4
2668 Female, age 75, unknown 32.6
2087 Female, age 72, unknown 30.1
2261 Male, age 18, unknown 28.9
1796 Male, age 53, unknown 26.6
1913 Female, age 42, unknown 25.5
2587 Male, age 74, left hemisphere 24.6
1995 Male, age 72, unknown 22.7
1839 Male, age 51, unknown 22.5
1895 Male, age 76, right hemisphere 21.5
2664 Male, age 75, both hemispheres 19.1
Ventral tegmental area
nTPM: 25.5
2218 Male, age 76, both hemispheres 32.8
2410 Female, age 72, unknown 29.6
1915 Female, age 42, unknown 24.4
1942 Male, age 51, unknown 23.4
2223 Female, age 72, unknown 23.4
2021 Male, age 53, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 139

Max nTPM: 42.3
Min nTPM: 4.2
Std nTPM: 5.7
Median nTPM: 10.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 28.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 26.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 25.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 23.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 21.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 21.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.0
FF:10158-103A5 76 years, female 41.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 18.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.0
Samples: 4

Max nTPM: 17.3
Min nTPM: 9.3
Sample A Female 17.3
Sample B Female 11.7
Sample C Male 13.6
Sample D Male 9.3
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 13.8
Sample C Male 25.8
Sample D Male 17.1
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 14.7
Min nTPM: 12.3
Sample B Female 12.3
Sample C Male 14.7
Sample D Male 12.5
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 14.4
Sample A Female 16.1
Sample B Female 14.4
Sample C Male 24.6
Sample D Male 16.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 41.0
Min nTPM: 38.4
Sample A Male 38.4
Sample B Male 41.0
Sample C Female 39.1
Sample D Female 40.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
68744606 Antisense, RP_050208_01_C03, Mouse strain C57BL/6J (56 days, male) 1.6

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