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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RTF2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
158.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
117.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
113.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
111.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
110.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
102.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
101.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
101.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
98.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
97.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
96.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
95.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
92.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
91.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
90.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
87.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
86.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
85.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
82.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
82.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
82.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
80.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
80.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
80.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
80.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
80.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
79.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
78.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
77.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
77.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
77.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
76.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
74.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
74.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
73.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
73.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
73.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
72.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
72.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
72.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
70.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
70.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
70.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
69.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
69.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
68.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
68.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
68.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
68.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
68.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
67.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
67.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
67.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
67.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
66.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
66.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
65.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
65.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
65.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
64.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
63.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
63.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
63.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
63.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
63.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
62.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
60.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
60.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
60.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
60.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
59.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
59.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
58.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
58.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
58.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
58.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
58.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
57.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
57.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
57.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
56.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
56.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
56.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
55.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
55.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
55.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
55.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
55.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
54.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
53.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
53.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
53.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
53.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
53.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
53.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
53.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
52.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
52.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
52.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
52.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
52.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
52.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
52.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
52.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
52.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
51.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
51.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
51.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
51.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
50.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
50.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
50.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
49.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
49.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
49.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
49.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
49.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
49.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
48.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
48.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
48.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
48.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
47.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
47.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
46.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
46.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
46.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
45.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
45.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
45.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
44.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
44.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
44.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
43.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
43.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
42.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
42.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
42.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
41.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
41.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
41.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
40.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
40.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
40.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
40.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
40.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
39.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
39.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
39.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
39.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
38.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
38.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
37.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
37.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
37.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
37.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
35.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
35.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
35.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
35.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
32.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
31.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
31.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
31.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
31.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
30.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
30.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
30.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
29.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
29.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
27.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
27.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
26.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
26.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
25.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
25.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
25.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
25.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
24.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
22.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
21.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
16.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.5
545
Tumor
1.3
685
Tumor
1.3
965
Tumor
1.2
351
Tumor
1.2
497
Tumor
1.2
411
Tumor
1.0
647
Tumor
1.0
357
Tumor
1.0
695
Tumor
0.9
533
Tumor
0.9
211
Tumor
0.9
661
Tumor
0.8
535
Tumor
0.8
513
Tumor
0.8
663
Tumor
0.8
1027
Tumor
0.8
883
Tumor
0.7
785
Tumor
0.7
743
Tumor
0.7
431
Tumor
0.7
435
Tumor
0.7
483
Tumor
0.7
665
Tumor
0.7
977
Tumor
0.7
737
Tumor
0.7
465
Tumor
0.7
724
Normal
0.7
171
Tumor
0.6
983
Tumor
0.6
355
Tumor
0.6
777
Tumor
0.6
925
Tumor
0.6
727
Tumor
0.5
567
Tumor
0.5
493
Tumor
0.5
813
Tumor
0.5
963
Tumor
0.5
873
Tumor
0.5
814
Normal
0.5
671
Tumor
0.5
261
Tumor
0.5
865
Tumor
0.5
913
Tumor
0.5
537
Tumor
0.5
877
Tumor
0.5
1021
Tumor
0.5
953
Tumor
0.5
815
Tumor
0.5
131
Tumor
0.5
861
Tumor
0.5
957
Tumor
0.4
385
Tumor
0.4
981
Tumor
0.4
1015
Tumor
0.4
285
Tumor
0.4
951
Tumor
0.4
425
Tumor
0.4
445
Tumor
0.4
923
Tumor
0.4
1041
Tumor
0.4
283
Tumor
0.4
715
Tumor
0.4
943
Tumor
0.4
447
Tumor
0.4
741
Tumor
0.3
881
Tumor
0.3
135
Tumor
0.3
313
Tumor
0.3
112
Tumor
0.3
515
Tumor
0.3
553
Tumor
0.3
473
Tumor
0.3
487
Tumor
0.3
937
Tumor
0.3
817
Tumor
0.3
615
Tumor
0.3
527
Tumor
0.3
127
Tumor
0.3
975
Tumor
0.3
755
Tumor
0.3
851
Tumor
0.3
217
Tumor
0.3
477
Tumor
0.3
421
Tumor
0.2
917
Tumor
0.2
1045
Tumor
0.2
161
Tumor
0.2
455
Tumor
0.2
823
Tumor
0.2
213
Tumor
0.2
915
Tumor
0.2
311
Tumor
0.2
297
Tumor
0.2
1031
Tumor
0.2
383
Tumor
0.2
571
Tumor
0.2
517
Tumor
0.2
471
Tumor
0.1
185
Tumor
0.1
525
Tumor
0.1
415
Tumor
0.1
911
Tumor
0.1
492
Normal
0.1
375
Tumor
0.1
966
Normal
0.1
863
Tumor
0.1
367
Tumor
0.1
461
Tumor
0.1
921
Tumor
0.1
538
Normal
0.1
395
Tumor
0.1
141
Tumor
0.1
523
Tumor
0.1
536
Normal
0.1
331
Tumor
0.1
955
Tumor
0.1
145
Tumor
0.1
967
Tumor
0.1
554
Normal
0.1
563
Tumor
0.0
137
Tumor
0.0
467
Tumor
0.0
1043
Tumor
0.0
433
Tumor
0.0
546
Normal
0.0
387
Tumor
0.0
451
Tumor
0.0
365
Tumor
0.0
914
Normal
0.0
746
Normal
0.0
984
Normal
0.0
956
Normal
0.0
922
Normal
0.0
147
Tumor
0.0
481
Tumor
0.0
857
Tumor
0.0
491
Tumor
0.0
423
Tumor
0.0
744
Normal
-0.1
498
Normal
-0.1
516
Normal
-0.1
327
Tumor
-0.1
267
Tumor
-0.1
867
Tumor
-0.1
223
Tumor
-0.1
528
Normal
-0.1
474
Normal
-0.1
958
Normal
-0.1
918
Normal
-0.1
635
Tumor
-0.1
524
Normal
-0.1
1014
Normal
-0.1
364
Normal
-0.1
926
Normal
-0.1
697
Tumor
-0.1
721
Tumor
-0.1
745
Tumor
-0.1
271
Tumor
-0.1
944
Normal
-0.1
978
Normal
-0.1
938
Normal
-0.1
191
Tumor
-0.1
627
Tumor
-0.1
1032
Normal
-0.1
924
Normal
-0.1
698
Normal
-0.1
484
Normal
-0.1
1042
Normal
-0.1
1025
Tumor
-0.2
478
Normal
-0.2
884
Normal
-0.2
231
Tumor
-0.2
257
Tumor
-0.2
412
Normal
-0.2
916
Normal
-0.2
361
Tumor
-0.2
874
Normal
-0.2
573
Tumor
-0.2
328
Normal
-0.2
448
Normal
-0.2
862
Normal
-0.2
1026
Normal
-0.2
713
Tumor
-0.2
146
Normal
-0.2
878
Normal
-0.2
1016
Normal
-0.2
187
Tumor
-0.2
696
Normal
-0.2
416
Normal
-0.2
952
Normal
-0.2
954
Normal
-0.2
778
Normal
-0.2
756
Normal
-0.2
113
Tumor
-0.2
1028
Normal
-0.2
126
Normal
-0.2
968
Normal
-0.2
192
Normal
-0.2
866
Normal
-0.2
268
Normal
-0.2
128
Normal
-0.2
427
Tumor
-0.2
868
Normal
-0.3
642
Normal
-0.3
518
Normal
-0.3
864
Normal
-0.3
964
Normal
-0.3
816
Normal
-0.3
514
Normal
-0.3
111
Normal
-0.3
526
Normal
-0.3
858
Normal
-0.3
852
Normal
-0.3
976
Normal
-0.3
714
Normal
-0.3
443
Tumor
-0.3
672
Normal
-0.3
413
Tumor
-0.3
482
Normal
-0.3
472
Normal
-0.3
494
Normal
-0.3
142
Normal
-0.3
818
Normal
-0.3
218
Normal
-0.3
662
Normal
-0.3
224
Normal
-0.3
125
Tumor
-0.3
195
Tumor
-0.3
462
Normal
-0.3
356
Normal
-0.3
214
Normal
-0.3
444
Normal
-0.3
341
Tumor
-0.3
824
Normal
-0.3
384
Normal
-0.3
716
Normal
-0.3
393
Tumor
-0.3
1022
Normal
-0.3
912
Normal
-0.3
362
Normal
-0.3
114
Normal
-0.3
738
Normal
-0.3
882
Normal
-0.3
262
Normal
-0.3
124
Normal
-0.3
212
Normal
-0.3
534
Normal
-0.3
188
Normal
-0.3
1044
Normal
-0.3
434
Normal
-0.3
391
Tumor
-0.3
258
Normal
-0.3
742
Normal
-0.3
284
Normal
-0.3
463
Tumor
-0.3
628
Normal
-0.3
123
Tumor
-0.3
728
Normal
-0.4
488
Normal
-0.4
636
Normal
-0.4
343
Tumor
-0.4
196
Normal
-0.4
222
Normal
-0.4
272
Normal
-0.4
617
Tumor
-0.4
982
Normal
-0.4
616
Normal
-0.4
722
Normal
-0.4
664
Normal
-0.4
386
Normal
-0.4
353
Tumor
-0.4
1046
Normal
-0.4
558
Normal
-0.4
392
Normal
-0.4
228
Normal
-0.4
446
Normal
-0.4
686
Normal
-0.4
232
Normal
-0.5
468
Normal
-0.5
148
Normal
-0.5
221
Tumor
-0.5
286
Normal
-0.5
138
Normal
-0.5
572
Normal
-0.5
786
Normal
-0.5
344
Normal
-0.5
666
Normal
-0.5
557
Tumor
-0.5
723
Tumor
-0.5
352
Normal
-0.5
568
Normal
-0.5
186
Normal
-0.5
641
Tumor
-0.5
363
Tumor
-0.5
564
Normal
-0.5
464
Normal
-0.5
396
Normal
-0.5
574
Normal
-0.5
436
Normal
-0.5
172
Normal
-0.5
394
Normal
-0.5
162
Normal
-0.5
136
Normal
-0.5
277
Tumor
-0.5
366
Normal
-0.6
354
Normal
-0.6
358
Normal
-0.6
618
Normal
-0.6
132
Normal
-0.6
456
Normal
-0.6
428
Normal
-0.6
278
Normal
-0.6
466
Normal
-0.6
227
Tumor
-0.6
368
Normal
-0.6
424
Normal
-0.6
648
Normal
-0.6
298
Normal
-0.6
452
Normal
-0.6
388
Normal
-0.6
422
Normal
-0.7
376
Normal
-0.7
342
Normal
-0.7
432
Normal
-0.7
426
Normal
-0.8
312
Normal
-0.9
414
Normal
-0.9
332
Normal
-0.9
314
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
