MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA Brain:141.9 nTPM
GTEx:16.3 nTPM
FANTOM5:21.4 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:43.5 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 141.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 79.3
2219 Male, age 76, both hemispheres 166.4
1833 Male, age 53, unknown 108.3
2019 Male, age 18, unknown 97.0
1830 Male, age 51, unknown 91.0
2411 Female, age 72, unknown 74.0
2586 Male, age 75, left hemisphere 71.1
1827 Male, age 72, unknown 54.0
1870 Female, age 42, unknown 52.9
2828 Female, age 72, unknown 43.8
2666 Male, age 74, left hemisphere 34.7
Dorsal raphe nucleus
nTPM: 66.5
1828 Male, age 53, unknown 80.5
2750 Male, age 76, both hemispheres 65.5
2016 Female, age 72, unknown 65.1
2298 Female, age 72, unknown 64.2
2047 Male, age 72, unknown 57.3
Inferior colliculus
nTPM: 65.8
2849 Male, age 72, unknown 75.3
1848 Female, age 42, unknown 70.0
1890 Male, age 53, unknown 66.0
2097 Female, age 72, unknown 52.0
Median raphe nucleus
nTPM: 61.2
2220 Male, age 76, midline 61.2
Periaquaductal grey, anterior
nTPM: 55.7
2502 Female, age 75, unknown 116.6
1947 Male, age 18, unknown 25.6
1795 Male, age 51, unknown 24.7
Periaquaductal grey, dorsal
nTPM: 56.8
1840 Male, age 53, unknown 70.3
2464 Female, age 72, unknown 60.9
2850 Male, age 76, both hemispheres 53.8
1831 Male, age 72, unknown 42.0
Periaquaductal grey, lateral
nTPM: 54.5
2140 Male, age 76, both hemispheres 57.9
2272 Male, age 74, both hemispheres 56.7
2053 Male, age 18, unknown 48.9
Pretectal area
nTPM: 64.0
2407 Male, age 75, both hemispheres 97.8
1944 Female, age 72, unknown 77.5
2316 Male, age 76, right hemisphere 73.7
2273 Male, age 74, both hemispheres 66.7
1816 Male, age 51, unknown 65.6
2007 Male, age 72, unknown 62.2
1815 Male, age 53, unknown 58.1
1817 Female, age 42, unknown 57.8
2224 Female, age 72, unknown 56.6
2667 Female, age 75, unknown 44.3
2825 Male, age 18, unknown 43.5
Red nucleus
nTPM: 63.6
2785 Male, age 18, unknown 94.0
2584 Male, age 75, left hemisphere 74.0
2588 Male, age 74, left hemisphere 73.8
2503 Female, age 72, unknown 70.1
2823 Male, age 76, right hemisphere 63.1
2725 Female, age 75, unknown 60.6
1865 Male, age 51, unknown 59.6
2769 Male, age 72, unknown 58.4
2227 Male, age 72, unknown 58.1
1821 Female, age 72, unknown 53.3
1904 Male, age 53, unknown 52.9
1954 Female, age 42, unknown 45.3
Substantia nigra
nTPM: 141.9
2241 Male, age 72, unknown 217.3
1916 Female, age 42, unknown 205.4
2699 Male, age 18, unknown 181.5
1941 Male, age 53, unknown 181.0
1851 Male, age 51, unknown 162.5
2409 Female, age 72, unknown 127.2
2583 Male, age 75, right hemisphere 97.5
2665 Male, age 74, both hemispheres 94.5
1889 Female, age 72, unknown 82.2
2590 Female, age 75, unknown 69.6
Superior colliculus
nTPM: 75.0
1995 Male, age 72, unknown 91.6
1895 Male, age 76, right hemisphere 86.2
2087 Female, age 72, unknown 85.8
2664 Male, age 75, both hemispheres 80.7
2668 Female, age 75, unknown 74.1
1796 Male, age 53, unknown 69.6
2587 Male, age 74, left hemisphere 69.6
2261 Male, age 18, unknown 69.0
1839 Male, age 51, unknown 65.0
1913 Female, age 42, unknown 58.2
Ventral tegmental area
nTPM: 115.4
2218 Male, age 76, both hemispheres 153.5
2410 Female, age 72, unknown 137.4
1942 Male, age 51, unknown 133.0
1915 Female, age 42, unknown 126.6
2223 Female, age 72, unknown 96.6
2021 Male, age 53, unknown 45.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 56.2
Min nTPM: 1.5
Std nTPM: 10.7
Median nTPM: 13.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 56.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 52.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 44.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 38.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 38.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 38.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 37.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 37.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 35.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 34.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.4
FF:10158-103A5 76 years, female 21.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.9
Samples: 4

Max nTPM: 51.6
Min nTPM: 9.5
Sample A Female 39.6
Sample B Female 18.9
Sample C Male 51.6
Sample D Male 9.5
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 12.4
Sample C Male 12.2
Sample D Male 18.4
Periaqueductal gray
nTPM: 11.6
Samples: 3

Max nTPM: 12.9
Min nTPM: 9.1
Sample B Female 12.9
Sample C Male 12.7
Sample D Male 9.1
Superior colliculi
nTPM: 12.6
Samples: 4

Max nTPM: 18.7
Min nTPM: 7.8
Sample A Female 13.1
Sample B Female 10.9
Sample C Male 7.8
Sample D Male 18.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.5
Samples: 4

Max nTPM: 49.6
Min nTPM: 34.2
Sample A Male 34.2
Sample B Male 44.8
Sample C Female 49.6
Sample D Female 45.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
68844666 Antisense, RP_050222_02_B08, Mouse strain C57BL/6J (56 days, male) 10.9
71587783 Antisense, RP_050725_03_F07, Mouse strain C57BL/6J (56 days, male) 9.3
75042240 Antisense, RP_051219_02_C02, Mouse strain C57BL/6J (56 days, male) 6.5
74000492 Antisense, RP_051219_02_C02, Mouse strain C57BL/6J (56 days, male) 6.1

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