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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTBP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
73.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
202.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
191.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
180.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
155.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
155.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
154.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
154.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
150.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
144.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
142.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
141.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
133.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
133.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
129.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
128.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
128.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
127.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
127.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
127.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
126.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
126.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
124.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
123.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
122.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
121.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
120.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
117.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
117.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
116.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
116.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
114.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
112.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
112.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
112.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
111.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
110.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
110.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
110.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
109.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
107.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
107.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
107.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
107.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
106.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
106.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
105.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
105.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
104.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
102.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
102.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
102.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
102.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
102.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
102.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
100.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
99.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
98.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
98.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
97.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
97.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
97.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
97.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
97.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
96.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
96.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
96.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
95.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
95.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
95.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
95.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
94.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
94.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
93.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
93.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
93.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
92.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
91.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
91.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
90.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
90.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
90.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
90.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
90.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
90.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
89.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
89.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
89.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
89.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
89.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
89.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
88.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
88.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
88.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
87.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
87.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
87.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
86.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
86.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
86.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
85.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
85.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
85.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
85.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
85.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
85.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
85.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
85.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
84.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
84.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
84.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
83.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
83.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
83.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
83.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
83.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
83.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
83.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
82.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
82.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
82.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
81.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
81.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
80.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
80.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
80.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
80.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
79.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
79.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
78.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
78.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
78.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
78.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
77.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
77.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
77.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
76.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
76.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
75.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
75.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
75.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
75.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
75.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
75.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
74.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
74.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
73.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
73.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
73.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
73.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
73.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
72.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
72.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
71.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
71.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
71.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
71.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
71.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
70.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
70.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
70.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
70.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
70.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
70.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
70.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
70.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
70.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
70.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
70.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
69.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
69.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
69.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
69.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
68.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
68.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
68.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
68.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
68.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
68.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
67.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
67.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
67.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
66.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
66.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
66.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
66.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
66.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
65.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
64.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
64.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
64.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
63.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
63.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
63.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
62.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
62.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
62.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
62.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
62.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
62.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
62.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
62.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
62.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
61.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
61.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
60.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
60.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
60.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
60.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
60.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
60.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
60.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
59.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
59.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
59.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
59.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
58.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
58.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
58.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
58.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
58.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
58.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
57.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
57.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
57.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
57.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
57.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
56.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
56.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
56.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
56.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
56.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
55.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
54.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
54.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
53.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
53.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
53.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
53.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
53.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
53.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
53.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
52.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
52.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
51.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
51.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
51.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
51.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
51.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
51.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
51.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
51.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
50.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
50.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
50.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
49.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
48.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
48.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
48.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
48.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
48.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
47.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
47.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
47.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
47.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
46.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
46.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
46.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
46.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
46.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
46.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
45.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
45.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
45.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
45.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
45.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
44.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
44.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
44.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
44.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
44.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
43.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
43.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
42.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
41.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
41.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
40.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
40.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
39.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
36.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
35.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
34.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
33.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
33.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
32.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
29.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
23.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTBP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
72.8
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
196.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
185.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
176.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
130.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
129.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
125.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
123.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
122.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
119.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
118.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
117.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
116.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
115.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
114.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
114.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
113.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
112.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
112.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
111.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
111.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
111.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
109.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
109.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
107.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
106.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
106.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
105.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
105.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
104.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
102.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
102.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
102.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
101.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
101.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
101.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
100.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
99.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
99.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
99.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
99.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
98.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
97.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
97.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
97.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
96.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
96.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
96.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
95.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
95.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
94.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
93.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
92.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
92.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
91.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
90.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
90.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
89.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
87.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
87.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
86.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
86.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
86.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
85.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
85.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
85.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
84.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
84.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
84.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
84.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
84.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
83.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
83.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
82.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
82.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
81.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
80.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
79.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
79.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
78.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
78.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
78.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
77.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
76.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
76.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
76.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
76.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
76.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
75.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
75.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
75.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
74.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
74.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
74.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
74.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
74.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
73.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
73.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
72.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
71.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
71.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
69.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
69.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
69.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
69.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
68.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
68.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
68.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
68.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
68.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
67.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
67.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
67.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
67.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
66.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
66.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
66.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
66.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
66.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
66.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
66.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
65.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
65.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
65.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
65.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
64.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
64.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
64.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
64.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
63.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
63.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
62.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
62.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
62.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
62.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
61.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
61.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
61.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
60.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
60.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
59.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
59.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
58.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
58.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
58.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
57.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
57.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
57.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
57.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
57.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
57.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
57.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
57.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
56.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
56.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
56.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
55.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
55.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
55.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
55.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
55.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
54.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
54.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
53.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
53.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
53.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
51.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
51.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
51.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
51.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
50.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
49.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
49.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
48.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
48.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
47.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
47.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
47.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
47.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
46.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
46.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
46.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
45.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
44.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
43.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
42.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
40.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
39.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
38.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
36.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
32.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.7
413
Tumor
0.5
331
Tumor
0.5
665
Tumor
0.5
221
Tumor
0.4
351
Tumor
0.4
271
Tumor
0.4
443
Tumor
0.4
285
Tumor
0.3
467
Tumor
0.3
217
Tumor
0.3
463
Tumor
0.3
661
Tumor
0.3
171
Tumor
0.3
267
Tumor
0.3
967
Tumor
0.3
445
Tumor
0.3
131
Tumor
0.3
277
Tumor
0.3
384
Normal
0.3
425
Tumor
0.3
383
Tumor
0.3
423
Tumor
0.2
881
Tumor
0.2
431
Tumor
0.2
671
Tumor
0.2
357
Tumor
0.2
557
Tumor
0.2
813
Tumor
0.2
353
Tumor
0.2
191
Tumor
0.2
446
Normal
0.2
268
Normal
0.2
141
Tumor
0.2
414
Normal
0.2
444
Normal
0.2
135
Tumor
0.2
427
Tumor
0.2
432
Normal
0.2
388
Normal
0.2
877
Tumor
0.2
375
Tumor
0.2
395
Tumor
0.2
195
Tumor
0.2
192
Normal
0.2
641
Tumor
0.2
112
Tumor
0.2
332
Normal
0.2
428
Normal
0.2
367
Tumor
0.2
187
Tumor
0.2
396
Normal
0.2
814
Normal
0.2
426
Normal
0.2
125
Tumor
0.2
298
Normal
0.2
297
Tumor
0.2
391
Tumor
0.2
865
Tumor
0.2
777
Tumor
0.2
314
Normal
0.2
433
Tumor
0.2
186
Normal
0.2
394
Normal
0.2
464
Normal
0.2
376
Normal
0.1
162
Normal
0.1
411
Tumor
0.1
354
Normal
0.1
222
Normal
0.1
455
Tumor
0.1
172
Normal
0.1
231
Tumor
0.1
456
Normal
0.1
468
Normal
0.1
262
Normal
0.1
724
Normal
0.1
227
Tumor
0.1
452
Normal
0.1
662
Normal
0.1
392
Normal
0.1
352
Normal
0.1
465
Tumor
0.1
424
Normal
0.1
358
Normal
0.1
188
Normal
0.1
132
Normal
0.1
341
Tumor
0.1
663
Tumor
0.1
278
Normal
0.1
883
Tumor
0.1
196
Normal
0.1
185
Tumor
0.1
385
Tumor
0.1
744
Normal
0.1
148
Normal
0.1
342
Normal
0.1
128
Normal
0.1
147
Tumor
0.1
393
Tumor
0.1
161
Tumor
0.1
146
Normal
0.1
368
Normal
0.1
272
Normal
0.1
977
Tumor
0.1
863
Tumor
0.1
258
Normal
0.1
313
Tumor
0.1
672
Normal
0.1
343
Tumor
0.1
567
Tumor
0.1
213
Tumor
0.1
435
Tumor
0.1
422
Normal
0.1
387
Tumor
0.1
113
Tumor
0.1
145
Tumor
0.1
451
Tumor
0.1
666
Normal
0.1
223
Tumor
0.1
344
Normal
0.1
421
Tumor
0.1
466
Normal
0.1
386
Normal
0.1
571
Tumor
0.1
664
Normal
0.1
815
Tumor
0.1
635
Tumor
0.1
365
Tumor
0.1
126
Normal
0.1
124
Normal
0.1
434
Normal
0.1
636
Normal
0.0
497
Tumor
0.0
648
Normal
0.0
867
Tumor
0.0
436
Normal
0.0
136
Normal
0.0
111
Normal
0.0
114
Normal
0.0
366
Normal
0.0
138
Normal
0.0
232
Normal
0.0
218
Normal
0.0
911
Tumor
0.0
214
Normal
0.0
461
Tumor
0.0
573
Tumor
0.0
617
Tumor
0.0
737
Tumor
0.0
312
Normal
0.0
362
Normal
0.0
563
Tumor
0.0
261
Tumor
0.0
447
Tumor
0.0
286
Normal
0.0
361
Tumor
0.0
975
Tumor
0.0
913
Tumor
0.0
517
Tumor
0.0
785
Tumor
0.0
224
Normal
0.0
137
Tumor
0.0
741
Tumor
0.0
642
Normal
0.0
311
Tumor
0.0
817
Tumor
0.0
628
Normal
0.0
722
Normal
0.0
742
Normal
0.0
127
Tumor
0.0
954
Normal
0.0
142
Normal
0.0
284
Normal
0.0
627
Tumor
0.0
786
Normal
0.0
983
Tumor
-0.1
647
Tumor
-0.1
858
Normal
-0.1
568
Normal
-0.1
715
Tumor
-0.1
515
Tumor
-0.1
937
Tumor
-0.1
481
Tumor
-0.1
523
Tumor
-0.1
914
Normal
-0.1
618
Normal
-0.1
943
Tumor
-0.1
685
Tumor
-0.1
574
Normal
-0.1
615
Tumor
-0.1
228
Normal
-0.1
938
Normal
-0.1
851
Tumor
-0.1
488
Normal
-0.1
462
Normal
-0.1
746
Normal
-0.1
487
Tumor
-0.1
755
Tumor
-0.1
912
Normal
-0.1
818
Normal
-0.1
713
Tumor
-0.1
564
Normal
-0.1
738
Normal
-0.1
527
Tumor
-0.1
356
Normal
-0.1
498
Normal
-0.1
823
Tumor
-0.1
917
Tumor
-0.1
884
Normal
-0.1
1016
Normal
-0.1
824
Normal
-0.1
721
Tumor
-0.1
211
Tumor
-0.1
864
Normal
-0.1
723
Tumor
-0.1
868
Normal
-0.1
878
Normal
-0.1
545
Tumor
-0.1
616
Normal
-0.1
756
Normal
-0.1
778
Normal
-0.1
355
Tumor
-0.1
727
Tumor
-0.1
478
Normal
-0.1
976
Normal
-0.1
572
Normal
-0.1
328
Normal
-0.1
1041
Tumor
-0.2
482
Normal
-0.2
955
Tumor
-0.2
257
Tumor
-0.2
965
Tumor
-0.2
364
Normal
-0.2
728
Normal
-0.2
695
Tumor
-0.2
363
Tumor
-0.2
861
Tumor
-0.2
1021
Tumor
-0.2
212
Normal
-0.2
873
Tumor
-0.2
926
Normal
-0.2
963
Tumor
-0.2
882
Normal
-0.2
857
Tumor
-0.2
558
Normal
-0.2
327
Tumor
-0.2
528
Normal
-0.2
951
Tumor
-0.2
1025
Tumor
-0.2
978
Normal
-0.2
714
Normal
-0.2
416
Normal
-0.2
944
Normal
-0.2
984
Normal
-0.2
526
Normal
-0.2
283
Tumor
-0.2
921
Tumor
-0.2
698
Normal
-0.2
1045
Tumor
-0.2
513
Tumor
-0.2
866
Normal
-0.2
534
Normal
-0.2
716
Normal
-0.2
686
Normal
-0.2
964
Normal
-0.2
448
Normal
-0.2
816
Normal
-0.2
1042
Normal
-0.2
477
Tumor
-0.2
538
Normal
-0.2
922
Normal
-0.2
484
Normal
-0.2
862
Normal
-0.2
412
Normal
-0.2
1044
Normal
-0.2
696
Normal
-0.2
1046
Normal
-0.2
1032
Normal
-0.2
1028
Normal
-0.2
874
Normal
-0.2
471
Tumor
-0.2
514
Normal
-0.2
123
Tumor
-0.2
472
Normal
-0.2
982
Normal
-0.2
1027
Tumor
-0.2
518
Normal
-0.2
1031
Tumor
-0.2
1026
Normal
-0.2
1015
Tumor
-0.3
1022
Normal
-0.3
415
Tumor
-0.3
1014
Normal
-0.3
956
Normal
-0.3
494
Normal
-0.3
924
Normal
-0.3
1043
Tumor
-0.3
968
Normal
-0.3
493
Tumor
-0.3
918
Normal
-0.3
516
Normal
-0.3
474
Normal
-0.3
923
Tumor
-0.3
852
Normal
-0.3
524
Normal
-0.3
916
Normal
-0.3
915
Tumor
-0.3
953
Tumor
-0.3
966
Normal
-0.3
546
Normal
-0.3
952
Normal
-0.3
958
Normal
-0.3
491
Tumor
-0.4
483
Tumor
-0.4
1013
Tumor
-0.4
554
Normal
-0.4
492
Normal
-0.4
537
Tumor
-0.4
925
Tumor
-0.4
745
Tumor
-0.4
535
Tumor
-0.4
553
Tumor
-0.4
536
Normal
-0.4
525
Tumor
-0.4
473
Tumor
-0.4
697
Tumor
-0.5
981
Tumor
-0.5
533
Tumor
-0.6
957
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
