MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.7 nTPM
HPA Brain:104.7 nTPM
GTEx:46.7 nTPM
FANTOM5:120.2 Scaled Tags Per Million
Pig:132.4 nTPM
Mouse:284.8 nTPM
Allen mouse:14.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 104.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.4
2019 Male, age 18, unknown 114.9
2411 Female, age 72, unknown 98.8
1827 Male, age 72, unknown 97.9
2586 Male, age 75, left hemisphere 90.5
2219 Male, age 76, both hemispheres 89.2
2828 Female, age 72, unknown 83.4
1833 Male, age 53, unknown 78.9
1870 Female, age 42, unknown 78.6
1830 Male, age 51, unknown 71.7
2666 Male, age 74, left hemisphere 69.9
Dorsal raphe nucleus
nTPM: 94.0
2298 Female, age 72, unknown 112.5
1828 Male, age 53, unknown 110.0
2047 Male, age 72, unknown 93.8
2750 Male, age 76, both hemispheres 79.3
2016 Female, age 72, unknown 74.6
Inferior colliculus
nTPM: 89.3
2097 Female, age 72, unknown 104.9
1890 Male, age 53, unknown 93.3
1848 Female, age 42, unknown 88.0
2849 Male, age 72, unknown 70.8
Median raphe nucleus
nTPM: 74.2
2220 Male, age 76, midline 74.2
Periaquaductal grey, anterior
nTPM: 86.3
1947 Male, age 18, unknown 93.0
1795 Male, age 51, unknown 87.5
2502 Female, age 75, unknown 78.4
Periaquaductal grey, dorsal
nTPM: 67.3
2464 Female, age 72, unknown 68.7
1840 Male, age 53, unknown 68.1
1831 Male, age 72, unknown 67.6
2850 Male, age 76, both hemispheres 64.7
Periaquaductal grey, lateral
nTPM: 75.8
2272 Male, age 74, both hemispheres 100.1
2053 Male, age 18, unknown 64.1
2140 Male, age 76, both hemispheres 63.0
Pretectal area
nTPM: 97.0
2007 Male, age 72, unknown 131.2
1817 Female, age 42, unknown 119.8
1816 Male, age 51, unknown 115.3
1944 Female, age 72, unknown 114.0
2667 Female, age 75, unknown 109.1
2273 Male, age 74, both hemispheres 102.9
1815 Male, age 53, unknown 90.9
2224 Female, age 72, unknown 83.8
2316 Male, age 76, right hemisphere 70.7
2825 Male, age 18, unknown 68.2
2407 Male, age 75, both hemispheres 61.4
Red nucleus
nTPM: 91.4
1821 Female, age 72, unknown 115.6
2785 Male, age 18, unknown 107.5
2725 Female, age 75, unknown 102.5
2503 Female, age 72, unknown 96.8
2769 Male, age 72, unknown 94.0
1954 Female, age 42, unknown 89.7
2227 Male, age 72, unknown 89.3
2823 Male, age 76, right hemisphere 85.5
1865 Male, age 51, unknown 82.4
2588 Male, age 74, left hemisphere 82.1
1904 Male, age 53, unknown 81.9
2584 Male, age 75, left hemisphere 69.8
Substantia nigra
nTPM: 104.7
1916 Female, age 42, unknown 153.4
1941 Male, age 53, unknown 121.9
1851 Male, age 51, unknown 121.3
1889 Female, age 72, unknown 119.4
2409 Female, age 72, unknown 95.7
2665 Male, age 74, both hemispheres 94.4
2241 Male, age 72, unknown 93.9
2699 Male, age 18, unknown 89.9
2590 Female, age 75, unknown 79.7
2583 Male, age 75, right hemisphere 77.7
Superior colliculus
nTPM: 78.5
2087 Female, age 72, unknown 97.8
1796 Male, age 53, unknown 89.9
1895 Male, age 76, right hemisphere 87.5
2668 Female, age 75, unknown 83.8
2261 Male, age 18, unknown 82.8
2587 Male, age 74, left hemisphere 80.8
1839 Male, age 51, unknown 75.8
1995 Male, age 72, unknown 64.5
1913 Female, age 42, unknown 64.4
2664 Male, age 75, both hemispheres 58.0
Ventral tegmental area
nTPM: 92.8
2410 Female, age 72, unknown 119.5
1915 Female, age 42, unknown 112.4
2218 Male, age 76, both hemispheres 101.7
1942 Male, age 51, unknown 83.6
2223 Female, age 72, unknown 74.5
2021 Male, age 53, unknown 65.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 46.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.7
Samples: 139

Max nTPM: 141.4
Min nTPM: 13.7
Std nTPM: 18.9
Median nTPM: 43.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 141.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 119.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 90.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 88.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 87.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 84.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 82.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 81.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 81.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 81.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 74.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 120.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.2
FF:10158-103A5 76 years, female 120.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 132.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 95.7
Samples: 4

Max nTPM: 130.8
Min nTPM: 76.2
Sample A Female 130.8
Sample B Female 76.3
Sample C Male 99.5
Sample D Male 76.2
Midbrain
nTPM: 115.6
Samples: 4

Max nTPM: 146.9
Min nTPM: 93.5
Sample A Female 116.5
Sample B Female 93.5
Sample C Male 146.9
Sample D Male 105.3
Periaqueductal gray
nTPM: 83.9
Samples: 3

Max nTPM: 94.0
Min nTPM: 69.4
Sample B Female 88.3
Sample C Male 94.0
Sample D Male 69.4
Superior colliculi
nTPM: 132.4
Samples: 4

Max nTPM: 160.9
Min nTPM: 105.1
Sample A Female 155.4
Sample B Female 105.1
Sample C Male 160.9
Sample D Male 108.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 284.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 284.8
Samples: 4

Max nTPM: 304.9
Min nTPM: 267.1
Sample A Male 304.9
Sample B Male 273.7
Sample C Female 267.1
Sample D Female 293.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.3
68744540 Antisense, RP_050208_01_B03, Mouse strain C57BL/6J (56 days, male) 14.3

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