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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST3GAL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
143.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
138.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
128.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
126.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
122.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
112.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
106.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
106.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
106.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
96.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
92.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
85.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
85.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
83.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
83.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
79.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
75.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
75.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
73.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
72.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
69.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
69.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
64.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
63.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
62.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
59.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
58.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
57.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
56.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
55.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
55.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
54.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
53.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
53.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
51.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
50.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
49.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
49.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
48.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
47.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
47.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
47.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
45.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
44.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
41.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
40.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
39.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
39.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
39.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
37.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
35.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
35.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
32.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
32.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
31.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
30.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
30.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
28.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
26.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
25.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
25.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
25.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
24.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
24.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
22.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
21.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
21.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
19.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
18.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
18.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
16.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ST3GAL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
116.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
101.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
73.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
70.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
66.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
65.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
60.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
59.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
58.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
53.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
51.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
42.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
42.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
41.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
40.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
36.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
34.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
32.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
29.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
27.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
20.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
1.6
1041
Tumor
1.5
557
Tumor
1.4
395
Tumor
1.1
865
Tumor
1.0
267
Tumor
1.0
1027
Tumor
0.9
185
Tumor
0.9
1031
Tumor
0.8
517
Tumor
0.8
567
Tumor
0.8
127
Tumor
0.7
123
Tumor
0.7
313
Tumor
0.7
915
Tumor
0.7
963
Tumor
0.7
636
Normal
0.7
937
Tumor
0.7
861
Tumor
0.6
665
Tumor
0.6
755
Tumor
0.6
171
Tumor
0.6
1015
Tumor
0.6
125
Tumor
0.6
231
Tumor
0.6
713
Tumor
0.6
851
Tumor
0.6
112
Tumor
0.6
883
Tumor
0.5
311
Tumor
0.5
911
Tumor
0.5
211
Tumor
0.5
672
Normal
0.5
967
Tumor
0.5
823
Tumor
0.5
113
Tumor
0.5
431
Tumor
0.5
965
Tumor
0.5
257
Tumor
0.4
873
Tumor
0.4
145
Tumor
0.4
727
Tumor
0.4
981
Tumor
0.4
222
Normal
0.4
196
Normal
0.4
525
Tumor
0.4
867
Tumor
0.4
1025
Tumor
0.4
261
Tumor
0.4
1043
Tumor
0.4
172
Normal
0.4
396
Normal
0.4
162
Normal
0.4
465
Tumor
0.4
648
Normal
0.3
327
Tumor
0.3
148
Normal
0.3
388
Normal
0.3
564
Normal
0.3
487
Tumor
0.3
186
Normal
0.3
526
Normal
0.3
111
Normal
0.3
432
Normal
0.3
666
Normal
0.3
227
Tumor
0.3
572
Normal
0.3
394
Normal
0.3
616
Normal
0.3
715
Tumor
0.3
356
Normal
0.3
124
Normal
0.3
435
Tumor
0.3
217
Tumor
0.3
664
Normal
0.3
341
Tumor
0.3
944
Normal
0.3
722
Normal
0.3
964
Normal
0.3
392
Normal
0.3
427
Tumor
0.2
618
Normal
0.2
1032
Normal
0.2
697
Tumor
0.2
1014
Normal
0.2
975
Tumor
0.2
446
Normal
0.2
477
Tumor
0.2
368
Normal
0.2
161
Tumor
0.2
462
Normal
0.2
445
Tumor
0.2
662
Normal
0.2
423
Tumor
0.2
663
Tumor
0.2
686
Normal
0.2
558
Normal
0.2
426
Normal
0.2
221
Tumor
0.2
481
Tumor
0.2
922
Normal
0.2
387
Tumor
0.2
218
Normal
0.2
192
Normal
0.2
421
Tumor
0.2
1028
Normal
0.2
488
Normal
0.2
448
Normal
0.2
483
Tumor
0.2
228
Normal
0.2
412
Normal
0.2
696
Normal
0.2
954
Normal
0.2
1045
Tumor
0.2
921
Tumor
0.2
723
Tumor
0.2
284
Normal
0.2
214
Normal
0.2
568
Normal
0.2
958
Normal
0.2
195
Tumor
0.1
286
Normal
0.1
411
Tumor
0.1
232
Normal
0.1
452
Normal
0.1
912
Normal
0.1
698
Normal
0.1
132
Normal
0.1
728
Normal
0.1
224
Normal
0.1
128
Normal
0.1
391
Tumor
0.1
142
Normal
0.1
786
Normal
0.1
482
Normal
0.1
628
Normal
0.1
813
Tumor
0.1
126
Normal
0.1
514
Normal
0.1
714
Normal
0.1
136
Normal
0.1
716
Normal
0.1
342
Normal
0.1
223
Tumor
0.1
534
Normal
0.1
386
Normal
0.1
982
Normal
0.1
1013
Tumor
0.1
882
Normal
0.1
384
Normal
0.1
968
Normal
0.1
434
Normal
0.1
468
Normal
0.1
528
Normal
0.1
745
Tumor
0.1
671
Tumor
0.1
518
Normal
0.1
344
Normal
0.1
574
Normal
0.1
984
Normal
0.1
422
Normal
0.1
188
Normal
0.1
436
Normal
0.1
138
Normal
0.1
983
Tumor
0.1
212
Normal
0.0
778
Normal
0.0
642
Normal
0.0
464
Normal
0.0
884
Normal
0.0
926
Normal
0.0
393
Tumor
0.0
554
Normal
0.0
744
Normal
0.0
721
Tumor
0.0
268
Normal
0.0
976
Normal
0.0
466
Normal
0.0
414
Normal
0.0
424
Normal
0.0
615
Tumor
0.0
443
Tumor
0.0
358
Normal
0.0
1016
Normal
0.0
471
Tumor
0.0
456
Normal
0.0
746
Normal
0.0
444
Normal
0.0
484
Normal
0.0
277
Tumor
0.0
1022
Normal
0.0
413
Tumor
0.0
864
Normal
0.0
546
Normal
0.0
147
Tumor
0.0
814
Normal
0.0
474
Normal
0.0
918
Normal
0.0
1044
Normal
0.0
364
Normal
0.0
146
Normal
0.0
685
Tumor
0.0
472
Normal
0.0
361
Tumor
0.0
516
Normal
0.0
857
Tumor
0.0
641
Tumor
0.0
756
Normal
0.0
343
Tumor
0.0
536
Normal
0.0
868
Normal
0.0
262
Normal
0.0
862
Normal
0.0
473
Tumor
0.0
524
Normal
0.0
137
Tumor
0.0
187
Tumor
0.0
523
Tumor
-0.1
617
Tumor
-0.1
627
Tumor
-0.1
375
Tumor
-0.1
742
Normal
-0.1
428
Normal
-0.1
938
Normal
-0.1
114
Normal
-0.1
877
Tumor
-0.1
741
Tumor
-0.1
923
Tumor
-0.1
824
Normal
-0.1
191
Tumor
-0.1
1046
Normal
-0.1
376
Normal
-0.1
494
Normal
-0.1
328
Normal
-0.1
415
Tumor
-0.1
913
Tumor
-0.1
952
Normal
-0.1
416
Normal
-0.1
272
Normal
-0.1
141
Tumor
-0.1
354
Normal
-0.1
367
Tumor
-0.1
916
Normal
-0.1
571
Tumor
-0.1
966
Normal
-0.1
955
Tumor
-0.1
878
Normal
-0.1
331
Tumor
-0.1
978
Normal
-0.1
478
Normal
-0.1
866
Normal
-0.2
647
Tumor
-0.2
1042
Normal
-0.2
724
Normal
-0.2
914
Normal
-0.2
258
Normal
-0.2
213
Tumor
-0.2
314
Normal
-0.2
332
Normal
-0.2
352
Normal
-0.2
695
Tumor
-0.2
951
Tumor
-0.2
538
Normal
-0.2
492
Normal
-0.2
363
Tumor
-0.2
573
Tumor
-0.2
563
Tumor
-0.2
278
Normal
-0.2
738
Normal
-0.2
491
Tumor
-0.2
353
Tumor
-0.2
816
Normal
-0.2
515
Tumor
-0.2
285
Tumor
-0.2
498
Normal
-0.2
874
Normal
-0.2
953
Tumor
-0.2
298
Normal
-0.3
362
Normal
-0.3
863
Tumor
-0.3
467
Tumor
-0.3
858
Normal
-0.3
461
Tumor
-0.3
357
Tumor
-0.3
553
Tumor
-0.3
852
Normal
-0.3
785
Tumor
-0.3
957
Tumor
-0.3
513
Tumor
-0.3
463
Tumor
-0.3
943
Tumor
-0.3
818
Normal
-0.3
366
Normal
-0.3
451
Tumor
-0.3
433
Tumor
-0.3
312
Normal
-0.4
355
Tumor
-0.4
135
Tumor
-0.4
1026
Normal
-0.4
493
Tumor
-0.4
956
Normal
-0.4
447
Tumor
-0.4
351
Tumor
-0.4
977
Tumor
-0.4
924
Normal
-0.5
917
Tumor
-0.5
425
Tumor
-0.5
737
Tumor
-0.6
283
Tumor
-0.6
545
Tumor
-0.6
925
Tumor
-0.6
297
Tumor
-0.7
661
Tumor
-0.7
365
Tumor
-0.7
817
Tumor
-0.7
527
Tumor
-0.7
383
Tumor
-0.7
1021
Tumor
-0.7
535
Tumor
-0.7
455
Tumor
-0.8
881
Tumor
-0.8
497
Tumor
-0.8
635
Tumor
-0.9
271
Tumor
-0.9
777
Tumor
-1.0
385
Tumor
-1.0
815
Tumor
-1.0
131
Tumor
-1.0
533
Tumor
-1.3
743
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
