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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFIX is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
92.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
81.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
78.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
71.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
70.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
68.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
67.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
54.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
53.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
51.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
51.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
49.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
48.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
41.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
36.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
35.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
30.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
27.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
27.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
26.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
26.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
25.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
24.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
19.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NFIX is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
26.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
977
Tumor
1.5
911
Tumor
1.2
915
Tumor
1.0
131
Tumor
0.9
865
Tumor
0.8
741
Tumor
0.8
123
Tumor
0.8
1041
Tumor
0.8
867
Tumor
0.7
813
Tumor
0.7
523
Tumor
0.7
261
Tumor
0.7
445
Tumor
0.6
171
Tumor
0.6
861
Tumor
0.6
744
Normal
0.6
1015
Tumor
0.6
527
Tumor
0.6
192
Normal
0.5
515
Tumor
0.5
423
Tumor
0.5
823
Tumor
0.5
431
Tumor
0.5
981
Tumor
0.5
746
Normal
0.5
355
Tumor
0.5
737
Tumor
0.5
685
Tumor
0.5
878
Normal
0.5
785
Tumor
0.4
647
Tumor
0.4
481
Tumor
0.4
141
Tumor
0.4
545
Tumor
0.4
938
Normal
0.4
465
Tumor
0.4
473
Tumor
0.4
412
Normal
0.4
393
Tumor
0.4
982
Normal
0.4
487
Tumor
0.4
1014
Normal
0.4
963
Tumor
0.3
483
Tumor
0.3
357
Tumor
0.3
482
Normal
0.3
451
Tumor
0.3
224
Normal
0.3
715
Tumor
0.3
124
Normal
0.3
161
Tumor
0.3
943
Tumor
0.3
332
Normal
0.3
952
Normal
0.3
297
Tumor
0.3
917
Tumor
0.3
415
Tumor
0.3
472
Normal
0.3
461
Tumor
0.3
884
Normal
0.3
956
Normal
0.3
484
Normal
0.3
665
Tumor
0.3
824
Normal
0.3
912
Normal
0.3
538
Normal
0.2
271
Tumor
0.2
874
Normal
0.2
944
Normal
0.2
954
Normal
0.2
663
Tumor
0.2
863
Tumor
0.2
816
Normal
0.2
231
Tumor
0.2
924
Normal
0.2
493
Tumor
0.2
474
Normal
0.2
433
Tumor
0.2
818
Normal
0.2
756
Normal
0.2
1013
Tumor
0.2
462
Normal
0.2
984
Normal
0.2
866
Normal
0.2
755
Tumor
0.2
882
Normal
0.2
777
Tumor
0.2
554
Normal
0.2
742
Normal
0.2
881
Tumor
0.2
478
Normal
0.2
277
Tumor
0.2
428
Normal
0.2
1032
Normal
0.2
492
Normal
0.2
114
Normal
0.2
284
Normal
0.2
343
Tumor
0.2
557
Tumor
0.2
356
Normal
0.2
1016
Normal
0.2
857
Tumor
0.2
342
Normal
0.2
185
Tumor
0.1
212
Normal
0.1
864
Normal
0.1
162
Normal
0.1
553
Tumor
0.1
222
Normal
0.1
298
Normal
0.1
128
Normal
0.1
464
Normal
0.1
968
Normal
0.1
966
Normal
0.1
955
Tumor
0.1
534
Normal
0.1
738
Normal
0.1
964
Normal
0.1
443
Tumor
0.1
498
Normal
0.1
283
Tumor
0.1
396
Normal
0.1
574
Normal
0.1
858
Normal
0.1
328
Normal
0.1
786
Normal
0.1
852
Normal
0.1
258
Normal
0.1
436
Normal
0.1
314
Normal
0.1
975
Tumor
0.1
388
Normal
0.1
513
Tumor
0.1
112
Tumor
0.1
364
Normal
0.1
136
Normal
0.1
883
Tumor
0.1
778
Normal
0.1
228
Normal
0.1
714
Normal
0.1
142
Normal
0.1
922
Normal
0.1
572
Normal
0.1
344
Normal
0.1
568
Normal
0.1
862
Normal
0.1
546
Normal
0.1
444
Normal
0.1
958
Normal
0.1
132
Normal
0.1
354
Normal
0.1
488
Normal
0.1
695
Tumor
0.1
286
Normal
0.1
1046
Normal
0.1
146
Normal
0.1
386
Normal
0.1
696
Normal
0.1
148
Normal
0.1
723
Tumor
0.1
716
Normal
0.1
615
Tumor
0.0
721
Tumor
0.0
965
Tumor
0.0
416
Normal
0.0
1026
Normal
0.0
352
Normal
0.0
477
Tumor
0.0
1022
Normal
0.0
111
Normal
0.0
353
Tumor
0.0
376
Normal
0.0
138
Normal
0.0
267
Tumor
0.0
446
Normal
0.0
196
Normal
0.0
923
Tumor
0.0
268
Normal
0.0
392
Normal
0.0
447
Tumor
0.0
516
Normal
0.0
232
Normal
0.0
918
Normal
0.0
686
Normal
0.0
814
Normal
0.0
1031
Tumor
0.0
394
Normal
0.0
1042
Normal
0.0
976
Normal
0.0
422
Normal
0.0
432
Normal
0.0
384
Normal
0.0
916
Normal
0.0
743
Tumor
0.0
664
Normal
0.0
456
Normal
0.0
272
Normal
0.0
414
Normal
0.0
137
Tumor
0.0
452
Normal
0.0
375
Tumor
0.0
365
Tumor
0.0
978
Normal
0.0
172
Normal
0.0
327
Tumor
0.0
147
Tumor
0.0
728
Normal
0.0
434
Normal
0.0
411
Tumor
0.0
528
Normal
0.0
1043
Tumor
0.0
914
Normal
0.0
186
Normal
0.0
937
Tumor
0.0
126
Normal
0.0
395
Tumor
0.0
873
Tumor
0.0
278
Normal
0.0
366
Normal
-0.1
455
Tumor
-0.1
921
Tumor
-0.1
868
Normal
-0.1
536
Normal
-0.1
426
Normal
-0.1
913
Tumor
-0.1
427
Tumor
-0.1
217
Tumor
-0.1
494
Normal
-0.1
672
Normal
-0.1
497
Tumor
-0.1
618
Normal
-0.1
722
Normal
-0.1
383
Tumor
-0.1
526
Normal
-0.1
262
Normal
-0.1
564
Normal
-0.1
1045
Tumor
-0.1
424
Normal
-0.1
312
Normal
-0.1
214
Normal
-0.1
953
Tumor
-0.1
188
Normal
-0.1
662
Normal
-0.1
1044
Normal
-0.1
1027
Tumor
-0.1
926
Normal
-0.1
558
Normal
-0.1
466
Normal
-0.2
1025
Tumor
-0.2
1021
Tumor
-0.2
313
Tumor
-0.2
648
Normal
-0.2
218
Normal
-0.2
127
Tumor
-0.2
362
Normal
-0.2
468
Normal
-0.2
187
Tumor
-0.2
113
Tumor
-0.2
616
Normal
-0.2
358
Normal
-0.2
524
Normal
-0.2
635
Tumor
-0.2
514
Normal
-0.2
877
Tumor
-0.2
1028
Normal
-0.2
425
Tumor
-0.2
221
Tumor
-0.2
463
Tumor
-0.2
698
Normal
-0.2
491
Tumor
-0.2
421
Tumor
-0.2
518
Normal
-0.3
636
Normal
-0.3
213
Tumor
-0.3
471
Tumor
-0.3
666
Normal
-0.3
311
Tumor
-0.3
517
Tumor
-0.3
435
Tumor
-0.3
642
Normal
-0.3
448
Normal
-0.3
361
Tumor
-0.3
341
Tumor
-0.3
368
Normal
-0.3
957
Tumor
-0.3
125
Tumor
-0.3
563
Tumor
-0.3
697
Tumor
-0.3
223
Tumor
-0.3
567
Tumor
-0.3
351
Tumor
-0.3
727
Tumor
-0.4
925
Tumor
-0.4
195
Tumor
-0.4
145
Tumor
-0.4
525
Tumor
-0.4
627
Tumor
-0.4
191
Tumor
-0.5
713
Tumor
-0.5
628
Normal
-0.5
135
Tumor
-0.5
257
Tumor
-0.5
331
Tumor
-0.5
817
Tumor
-0.5
533
Tumor
-0.5
951
Tumor
-0.6
724
Normal
-0.6
467
Tumor
-0.6
211
Tumor
-0.6
363
Tumor
-0.7
537
Tumor
-0.7
571
Tumor
-0.7
573
Tumor
-0.7
413
Tumor
-0.7
967
Tumor
-0.7
285
Tumor
-0.7
227
Tumor
-0.8
617
Tumor
-0.8
387
Tumor
-0.9
641
Tumor
-0.9
745
Tumor
-1.0
983
Tumor
-1.1
391
Tumor
-1.1
385
Tumor
-1.1
535
Tumor
-1.2
661
Tumor
-1.2
851
Tumor
-1.2
671
Tumor
-1.3
815
Tumor
-1.4
367
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
