MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.0 nTPM
HPA Brain:54.8 nTPM
GTEx:11.0 nTPM
FANTOM5:0.3 Scaled Tags Per Million
Pig:13.4 nTPM
Mouse:48.2 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.1
1827 Male, age 72, unknown 33.3
2219 Male, age 76, both hemispheres 30.8
2586 Male, age 75, left hemisphere 30.4
2411 Female, age 72, unknown 27.0
2828 Female, age 72, unknown 25.7
2666 Male, age 74, left hemisphere 25.4
1870 Female, age 42, unknown 24.2
1833 Male, age 53, unknown 22.6
2019 Male, age 18, unknown 22.1
1830 Male, age 51, unknown 19.6
Dorsal raphe nucleus
nTPM: 45.0
2298 Female, age 72, unknown 65.4
2047 Male, age 72, unknown 54.2
2750 Male, age 76, both hemispheres 40.5
1828 Male, age 53, unknown 35.4
2016 Female, age 72, unknown 29.7
Inferior colliculus
nTPM: 26.8
2097 Female, age 72, unknown 31.8
1890 Male, age 53, unknown 29.5
2849 Male, age 72, unknown 24.6
1848 Female, age 42, unknown 21.2
Median raphe nucleus
nTPM: 54.8
2220 Male, age 76, midline 54.8
Periaquaductal grey, anterior
nTPM: 42.0
2502 Female, age 75, unknown 44.4
1795 Male, age 51, unknown 43.6
1947 Male, age 18, unknown 37.9
Periaquaductal grey, dorsal
nTPM: 37.1
2850 Male, age 76, both hemispheres 44.5
1840 Male, age 53, unknown 41.8
1831 Male, age 72, unknown 34.9
2464 Female, age 72, unknown 27.0
Periaquaductal grey, lateral
nTPM: 39.0
2272 Male, age 74, both hemispheres 48.6
2140 Male, age 76, both hemispheres 38.8
2053 Male, age 18, unknown 29.6
Pretectal area
nTPM: 34.4
2273 Male, age 74, both hemispheres 48.0
2224 Female, age 72, unknown 44.5
1944 Female, age 72, unknown 38.4
1816 Male, age 51, unknown 38.0
2667 Female, age 75, unknown 35.2
2825 Male, age 18, unknown 34.8
2007 Male, age 72, unknown 34.4
1817 Female, age 42, unknown 30.9
1815 Male, age 53, unknown 30.3
2316 Male, age 76, right hemisphere 22.0
2407 Male, age 75, both hemispheres 21.8
Red nucleus
nTPM: 16.8
2584 Male, age 75, left hemisphere 26.7
2785 Male, age 18, unknown 21.9
1821 Female, age 72, unknown 19.3
2725 Female, age 75, unknown 17.8
1954 Female, age 42, unknown 16.9
2769 Male, age 72, unknown 15.2
2227 Male, age 72, unknown 14.4
1904 Male, age 53, unknown 14.1
2503 Female, age 72, unknown 14.0
2588 Male, age 74, left hemisphere 14.0
2823 Male, age 76, right hemisphere 13.9
1865 Male, age 51, unknown 13.8
Substantia nigra
nTPM: 31.4
2665 Male, age 74, both hemispheres 40.7
1916 Female, age 42, unknown 40.5
1851 Male, age 51, unknown 35.9
1941 Male, age 53, unknown 34.0
2241 Male, age 72, unknown 33.2
2699 Male, age 18, unknown 28.0
1889 Female, age 72, unknown 27.8
2409 Female, age 72, unknown 27.2
2590 Female, age 75, unknown 26.2
2583 Male, age 75, right hemisphere 21.1
Superior colliculus
nTPM: 27.7
2261 Male, age 18, unknown 36.3
2664 Male, age 75, both hemispheres 34.2
1796 Male, age 53, unknown 32.6
2087 Female, age 72, unknown 30.5
2587 Male, age 74, left hemisphere 26.8
2668 Female, age 75, unknown 26.5
1839 Male, age 51, unknown 25.4
1895 Male, age 76, right hemisphere 24.3
1995 Male, age 72, unknown 20.9
1913 Female, age 42, unknown 19.1
Ventral tegmental area
nTPM: 37.6
1942 Male, age 51, unknown 44.9
2218 Male, age 76, both hemispheres 43.8
2021 Male, age 53, unknown 39.3
1915 Female, age 42, unknown 37.7
2410 Female, age 72, unknown 32.6
2223 Female, age 72, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.0
Samples: 139

Max nTPM: 35.6
Min nTPM: 0.9
Std nTPM: 7.4
Median nTPM: 7.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 35.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 29.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 29.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 26.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 26.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 24.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 24.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 24.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 24.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 23.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.3
FF:10158-103A5 76 years, female 0.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 13.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.3
Samples: 4

Max nTPM: 14.5
Min nTPM: 6.9
Sample A Female 14.5
Sample B Female 10.9
Sample C Male 12.7
Sample D Male 6.9
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.9
Sample A Female 11.9
Sample B Female 10.9
Sample C Male 13.1
Sample D Male 13.4
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 18.6
Min nTPM: 10.5
Sample B Female 11.1
Sample C Male 18.6
Sample D Male 10.5
Superior colliculi
nTPM: 12.0
Samples: 4

Max nTPM: 16.9
Min nTPM: 10.2
Sample A Female 16.9
Sample B Female 10.3
Sample C Male 10.2
Sample D Male 10.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.2
Samples: 4

Max nTPM: 52.1
Min nTPM: 41.1
Sample A Male 41.1
Sample B Male 50.4
Sample C Female 49.1
Sample D Female 52.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
392934 Antisense, RP_040804_02_A05, Mouse strain C57BL/6J (56 days, male) 1.2
71020402 Antisense, RP_050725_01_B01, Mouse strain C57BL/6J (56 days, male) 0.7

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