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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYPL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
176.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
132.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
128.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
127.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
116.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
113.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
108.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
107.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
102.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
100.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
94.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
94.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
92.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
90.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
88.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
88.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
86.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
86.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
84.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
83.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
83.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
82.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
82.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
77.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
77.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
75.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
75.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
75.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
74.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
73.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
73.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
72.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
72.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
72.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
72.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
71.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
71.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
70.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
70.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
67.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
67.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
65.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
65.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
65.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
64.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
64.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
64.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
63.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
62.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
62.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
62.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
61.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
61.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
61.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
61.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
61.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
61.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
60.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
60.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
60.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
59.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
59.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
58.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
58.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
58.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
58.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
57.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
57.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
57.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
56.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
56.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
55.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
55.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
53.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
53.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
53.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
52.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
52.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
52.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
52.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
51.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
50.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
50.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
50.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
50.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
49.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
49.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
49.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
49.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
49.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
48.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
48.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
48.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
47.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
47.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
47.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
47.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
46.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
46.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
46.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
45.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
45.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
45.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
45.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
44.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
43.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
43.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
43.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
42.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
42.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
42.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
42.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
42.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
42.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
41.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
41.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
41.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
41.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
40.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
40.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
40.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
40.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
40.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
40.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
39.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
39.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
38.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
38.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
37.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
37.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
36.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
36.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
36.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
35.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
35.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
33.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
33.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
32.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
31.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
30.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
30.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
28.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
28.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
28.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
28.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
28.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
27.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
27.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
27.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
26.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
25.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
25.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
24.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
24.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
23.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
22.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
22.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
22.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
17.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
16.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
12.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYPL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.4
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
147.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
120.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
117.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
116.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
113.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
113.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
110.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
107.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
106.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
105.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
102.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
100.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
99.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
99.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
98.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
97.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
97.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
95.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
92.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
89.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
88.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
88.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
87.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
86.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
86.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
85.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
83.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
81.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
77.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
76.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
76.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
75.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
75.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
74.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
74.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
74.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
73.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
73.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
73.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
72.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
72.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
72.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
72.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
71.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
70.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
70.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
70.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
70.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
69.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
69.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
68.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
67.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
67.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
66.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
66.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
66.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
66.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
65.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
65.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
65.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
64.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
64.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
64.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
63.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
63.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
62.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
61.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
60.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
60.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
60.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
60.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
60.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
59.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
59.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
58.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
58.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
58.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
57.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
57.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
56.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
55.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
55.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
55.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
55.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
55.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
55.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
54.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
54.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
54.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
54.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
53.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
53.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
53.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
52.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
52.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
52.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
52.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
52.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
51.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
51.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
51.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
51.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
50.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
50.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
49.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
49.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
48.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
47.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
47.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
47.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
46.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
46.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
45.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
45.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
44.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
44.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
44.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
44.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
44.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
43.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
42.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
42.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
42.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
41.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
40.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
38.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
38.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
36.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
35.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
33.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
27.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
24.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
22.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
2.0
445
Tumor
1.6
425
Tumor
1.3
387
Tumor
1.2
257
Tumor
1.0
813
Tumor
0.9
313
Tumor
0.9
527
Tumor
0.9
1027
Tumor
0.9
443
Tumor
0.8
137
Tumor
0.8
477
Tumor
0.8
471
Tumor
0.8
271
Tumor
0.8
231
Tumor
0.8
615
Tumor
0.7
455
Tumor
0.7
967
Tumor
0.7
515
Tumor
0.7
213
Tumor
0.7
297
Tumor
0.6
375
Tumor
0.6
171
Tumor
0.6
421
Tumor
0.6
147
Tumor
0.6
395
Tumor
0.6
195
Tumor
0.6
743
Tumor
0.6
1021
Tumor
0.5
383
Tumor
0.5
353
Tumor
0.5
365
Tumor
0.5
461
Tumor
0.5
431
Tumor
0.5
277
Tumor
0.5
1025
Tumor
0.5
427
Tumor
0.5
135
Tumor
0.5
185
Tumor
0.5
627
Tumor
0.5
384
Normal
0.4
341
Tumor
0.4
343
Tumor
0.4
925
Tumor
0.4
647
Tumor
0.4
124
Normal
0.4
465
Tumor
0.4
563
Tumor
0.4
344
Normal
0.4
357
Tumor
0.3
327
Tumor
0.3
863
Tumor
0.3
331
Tumor
0.3
975
Tumor
0.3
745
Tumor
0.3
433
Tumor
0.3
435
Tumor
0.3
937
Tumor
0.3
125
Tumor
0.3
385
Tumor
0.3
192
Normal
0.3
223
Tumor
0.2
671
Tumor
0.2
217
Tumor
0.2
957
Tumor
0.2
368
Normal
0.2
354
Normal
0.2
483
Tumor
0.2
272
Normal
0.2
434
Normal
0.2
642
Normal
0.2
737
Tumor
0.2
911
Tumor
0.2
127
Tumor
0.2
523
Tumor
0.2
557
Tumor
0.2
352
Normal
0.2
1013
Tumor
0.2
161
Tumor
0.2
358
Normal
0.2
636
Normal
0.2
423
Tumor
0.2
665
Tumor
0.2
191
Tumor
0.2
463
Tumor
0.1
187
Tumor
0.1
883
Tumor
0.1
386
Normal
0.1
977
Tumor
0.1
881
Tumor
0.1
342
Normal
0.1
567
Tumor
0.1
493
Tumor
0.1
411
Tumor
0.1
376
Normal
0.1
491
Tumor
0.1
361
Tumor
0.1
661
Tumor
0.1
311
Tumor
0.1
953
Tumor
0.1
186
Normal
0.1
1031
Tumor
0.1
873
Tumor
0.1
172
Normal
0.1
785
Tumor
0.1
814
Normal
0.1
131
Tumor
0.1
214
Normal
0.0
573
Tumor
0.0
366
Normal
0.0
138
Normal
0.0
777
Tumor
0.0
141
Tumor
0.0
571
Tumor
0.0
618
Normal
0.0
351
Tumor
0.0
487
Tumor
0.0
517
Tumor
0.0
258
Normal
0.0
367
Tumor
0.0
362
Normal
0.0
392
Normal
0.0
126
Normal
0.0
755
Tumor
0.0
268
Normal
0.0
278
Normal
0.0
744
Normal
0.0
132
Normal
0.0
227
Tumor
0.0
332
Normal
0.0
444
Normal
0.0
196
Normal
0.0
218
Normal
0.0
553
Tumor
0.0
497
Tumor
0.0
1028
Normal
0.0
617
Tumor
0.0
111
Normal
0.0
114
Normal
0.0
446
Normal
0.0
451
Tumor
-0.1
432
Normal
-0.1
123
Tumor
-0.1
574
Normal
-0.1
851
Tumor
-0.1
393
Tumor
-0.1
396
Normal
-0.1
628
Normal
-0.1
267
Tumor
-0.1
146
Normal
-0.1
113
Tumor
-0.1
1045
Tumor
-0.1
436
Normal
-0.1
823
Tumor
-0.1
221
Tumor
-0.1
188
Normal
-0.1
314
Normal
-0.1
564
Normal
-0.1
913
Tumor
-0.1
666
Normal
-0.1
136
Normal
-0.1
641
Tumor
-0.1
112
Tumor
-0.1
662
Normal
-0.1
672
Normal
-0.1
917
Tumor
-0.1
815
Tumor
-0.1
545
Tumor
-0.1
222
Normal
-0.1
388
Normal
-0.1
878
Normal
-0.1
261
Tumor
-0.2
513
Tumor
-0.2
533
Tumor
-0.2
232
Normal
-0.2
963
Tumor
-0.2
452
Normal
-0.2
312
Normal
-0.2
861
Tumor
-0.2
1015
Tumor
-0.2
865
Tumor
-0.2
697
Tumor
-0.2
648
Normal
-0.2
877
Tumor
-0.2
298
Normal
-0.2
148
Normal
-0.2
262
Normal
-0.2
664
Normal
-0.2
1026
Normal
-0.2
616
Normal
-0.2
422
Normal
-0.2
816
Normal
-0.2
394
Normal
-0.2
456
Normal
-0.2
746
Normal
-0.2
224
Normal
-0.3
874
Normal
-0.3
915
Tumor
-0.3
568
Normal
-0.3
914
Normal
-0.3
558
Normal
-0.3
285
Tumor
-0.3
413
Tumor
-0.3
713
Tumor
-0.3
415
Tumor
-0.3
145
Tumor
-0.3
162
Normal
-0.3
537
Tumor
-0.3
426
Normal
-0.3
1041
Tumor
-0.3
142
Normal
-0.3
128
Normal
-0.3
414
Normal
-0.3
778
Normal
-0.3
492
Normal
-0.3
468
Normal
-0.3
466
Normal
-0.3
391
Tumor
-0.3
727
Tumor
-0.3
923
Tumor
-0.3
467
Tumor
-0.3
818
Normal
-0.3
447
Tumor
-0.3
866
Normal
-0.3
721
Tumor
-0.4
572
Normal
-0.4
525
Tumor
-0.4
538
Normal
-0.4
428
Normal
-0.4
363
Tumor
-0.4
663
Tumor
-0.4
742
Normal
-0.4
824
Normal
-0.4
416
Normal
-0.4
867
Tumor
-0.4
965
Tumor
-0.4
817
Tumor
-0.5
882
Normal
-0.5
738
Normal
-0.5
424
Normal
-0.5
966
Normal
-0.5
516
Normal
-0.5
951
Tumor
-0.5
528
Normal
-0.5
857
Tumor
-0.5
864
Normal
-0.5
283
Tumor
-0.5
1042
Normal
-0.5
786
Normal
-0.5
956
Normal
-0.5
952
Normal
-0.5
695
Tumor
-0.5
728
Normal
-0.5
983
Tumor
-0.5
1043
Tumor
-0.5
412
Normal
-0.5
494
Normal
-0.5
741
Tumor
-0.5
884
Normal
-0.5
498
Normal
-0.5
464
Normal
-0.5
722
Normal
-0.5
715
Tumor
-0.5
1032
Normal
-0.5
921
Tumor
-0.5
698
Normal
-0.5
286
Normal
-0.6
852
Normal
-0.6
488
Normal
-0.6
976
Normal
-0.6
534
Normal
-0.6
554
Normal
-0.6
1022
Normal
-0.6
912
Normal
-0.6
328
Normal
-0.6
284
Normal
-0.6
862
Normal
-0.6
868
Normal
-0.6
756
Normal
-0.6
474
Normal
-0.6
858
Normal
-0.6
955
Tumor
-0.6
536
Normal
-0.6
356
Normal
-0.6
723
Tumor
-0.6
518
Normal
-0.7
526
Normal
-0.7
228
Normal
-0.7
943
Tumor
-0.7
982
Normal
-0.7
916
Normal
-0.7
448
Normal
-0.7
364
Normal
-0.7
355
Tumor
-0.7
968
Normal
-0.7
546
Normal
-0.7
524
Normal
-0.7
514
Normal
-0.7
981
Tumor
-0.7
714
Normal
-0.7
686
Normal
-0.7
924
Normal
-0.7
1016
Normal
-0.7
918
Normal
-0.7
484
Normal
-0.8
1046
Normal
-0.8
1044
Normal
-0.8
462
Normal
-0.8
535
Tumor
-0.8
984
Normal
-0.8
212
Normal
-0.8
716
Normal
-0.8
964
Normal
-0.8
724
Normal
-0.8
473
Tumor
-0.8
685
Tumor
-0.8
978
Normal
-0.9
958
Normal
-0.9
481
Tumor
-0.9
696
Normal
-0.9
922
Normal
-0.9
472
Normal
-0.9
211
Tumor
-1.0
478
Normal
-1.0
926
Normal
-1.0
1014
Normal
-1.1
938
Normal
-1.1
954
Normal
-1.2
482
Normal
-1.3
944
Normal
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
