MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.8 nTPM
HPA Brain:11.7 nTPM
GTEx:6.8 nTPM
FANTOM5:6.3 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:0.1 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 11.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
1830 Male, age 51, unknown 11.9
2586 Male, age 75, left hemisphere 11.9
1870 Female, age 42, unknown 9.7
1833 Male, age 53, unknown 7.5
2411 Female, age 72, unknown 7.2
2666 Male, age 74, left hemisphere 6.8
1827 Male, age 72, unknown 5.8
2828 Female, age 72, unknown 5.8
2019 Male, age 18, unknown 5.0
2219 Male, age 76, both hemispheres 4.4
Dorsal raphe nucleus
nTPM: 7.7
2298 Female, age 72, unknown 9.1
2750 Male, age 76, both hemispheres 7.9
2016 Female, age 72, unknown 7.7
2047 Male, age 72, unknown 7.6
1828 Male, age 53, unknown 6.3
Inferior colliculus
nTPM: 5.4
2849 Male, age 72, unknown 7.0
2097 Female, age 72, unknown 6.1
1890 Male, age 53, unknown 4.4
1848 Female, age 42, unknown 4.0
Median raphe nucleus
nTPM: 11.7
2220 Male, age 76, midline 11.7
Periaquaductal grey, anterior
nTPM: 6.5
2502 Female, age 75, unknown 7.7
1795 Male, age 51, unknown 6.7
1947 Male, age 18, unknown 5.2
Periaquaductal grey, dorsal
nTPM: 9.0
2850 Male, age 76, both hemispheres 11.5
1831 Male, age 72, unknown 8.7
1840 Male, age 53, unknown 7.9
2464 Female, age 72, unknown 7.8
Periaquaductal grey, lateral
nTPM: 9.2
2053 Male, age 18, unknown 12.7
2140 Male, age 76, both hemispheres 8.4
2272 Male, age 74, both hemispheres 6.4
Pretectal area
nTPM: 5.2
2273 Male, age 74, both hemispheres 12.4
2825 Male, age 18, unknown 9.5
2667 Female, age 75, unknown 6.5
2224 Female, age 72, unknown 5.7
2407 Male, age 75, both hemispheres 5.1
2316 Male, age 76, right hemisphere 4.8
1815 Male, age 53, unknown 3.7
1817 Female, age 42, unknown 3.0
1944 Female, age 72, unknown 2.4
1816 Male, age 51, unknown 2.0
2007 Male, age 72, unknown 1.7
Red nucleus
nTPM: 9.9
1865 Male, age 51, unknown 13.0
2725 Female, age 75, unknown 12.6
1954 Female, age 42, unknown 11.0
2227 Male, age 72, unknown 10.6
1821 Female, age 72, unknown 10.4
2823 Male, age 76, right hemisphere 10.1
2769 Male, age 72, unknown 10.0
2588 Male, age 74, left hemisphere 9.2
1904 Male, age 53, unknown 9.1
2503 Female, age 72, unknown 9.0
2584 Male, age 75, left hemisphere 8.9
2785 Male, age 18, unknown 5.4
Substantia nigra
nTPM: 6.5
1941 Male, age 53, unknown 11.0
2699 Male, age 18, unknown 9.7
2583 Male, age 75, right hemisphere 8.3
1851 Male, age 51, unknown 7.9
1916 Female, age 42, unknown 6.3
2241 Male, age 72, unknown 5.1
2665 Male, age 74, both hemispheres 5.1
2590 Female, age 75, unknown 5.0
1889 Female, age 72, unknown 4.4
2409 Female, age 72, unknown 2.4
Superior colliculus
nTPM: 6.5
1913 Female, age 42, unknown 15.1
1995 Male, age 72, unknown 12.6
2664 Male, age 75, both hemispheres 8.8
2587 Male, age 74, left hemisphere 6.3
1796 Male, age 53, unknown 4.8
1895 Male, age 76, right hemisphere 4.3
1839 Male, age 51, unknown 3.6
2261 Male, age 18, unknown 3.5
2087 Female, age 72, unknown 3.0
2668 Female, age 75, unknown 2.8
Ventral tegmental area
nTPM: 10.8
2223 Female, age 72, unknown 18.4
2021 Male, age 53, unknown 12.8
1942 Male, age 51, unknown 10.2
1915 Female, age 42, unknown 8.4
2218 Male, age 76, both hemispheres 8.1
2410 Female, age 72, unknown 7.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.8
Samples: 139

Max nTPM: 19.4
Min nTPM: 1.2
Std nTPM: 3.3
Median nTPM: 6.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 19.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 15.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 14.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 13.6
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 13.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 12.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 12.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 12.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.3
FF:10158-103A5 76 years, female 6.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.2
Samples: 4

Max nTPM: 2.3
Min nTPM: 0.6
Sample A Female 0.8
Sample B Female 1.2
Sample C Male 0.6
Sample D Male 2.3
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.4
Sample C Male 1.1
Sample D Male 1.9
Periaqueductal gray
nTPM: 1.3
Samples: 3

Max nTPM: 1.8
Min nTPM: 0.5
Sample B Female 1.8
Sample C Male 0.5
Sample D Male 1.7
Superior colliculi
nTPM: 0.8
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 1.1
Sample C Male 0.8
Sample D Male 1.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.1
Sample C Female 0.1
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68341340 Antisense, RP_041207_01_D05, Mouse strain C57BL/6J (56 days, male) 0.2

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