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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
64.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
248.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
221.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
219.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
214.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
204.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
194.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
191.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
189.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
187.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
180.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
171.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
168.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
164.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
160.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
156.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
153.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
149.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
149.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
148.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
145.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
143.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
142.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
131.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
130.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
130.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
128.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
127.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
126.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
125.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
121.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
120.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
120.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
119.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
119.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
116.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
115.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
115.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
115.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
114.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
114.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
111.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
111.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
111.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
111.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
110.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
110.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
107.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
107.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
107.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
105.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
103.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
103.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
102.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
101.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
101.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
99.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
97.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
97.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
97.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
97.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
96.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
96.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
94.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
93.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
93.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
93.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
93.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
92.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
92.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
91.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
90.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
90.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
90.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
89.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
89.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
87.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
87.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
87.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
86.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
86.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
85.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
84.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
83.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
82.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
82.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
82.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
81.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
81.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
80.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
80.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
79.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
79.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
79.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
79.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
78.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
78.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
77.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
76.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
76.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
76.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
75.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
75.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
75.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
75.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
75.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
74.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
74.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
74.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
74.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
74.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
73.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
73.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
72.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
72.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
72.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
72.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
72.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
72.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
72.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
71.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
71.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
71.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
71.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
71.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
69.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
69.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
69.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
69.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
69.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
69.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
68.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
68.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
68.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
68.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
67.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
67.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
67.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
67.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
66.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
66.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
66.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
65.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
64.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
64.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
64.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
64.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
63.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
63.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
62.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
61.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
61.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
61.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
61.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
60.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
60.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
59.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
59.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
59.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
59.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
59.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
59.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
59.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
58.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
56.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
56.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
56.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
55.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
55.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
55.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
54.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
54.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
54.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
54.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
53.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
53.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
53.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
53.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
53.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
53.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
52.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
52.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
52.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
51.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
51.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
51.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
51.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
51.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
50.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
50.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
50.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
50.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
49.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
48.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
48.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
47.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
47.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
47.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
47.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
46.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
46.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
45.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
44.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
43.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
43.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
43.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
43.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
40.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
39.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
39.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
38.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
37.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
37.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
36.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
36.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
35.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
35.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
34.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
33.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
33.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
33.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
32.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
32.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
32.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
32.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
30.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
30.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
29.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
28.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
26.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
26.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
25.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
21.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
21.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
21.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
20.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
14.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.3
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
285.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
213.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
188.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
187.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
184.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
181.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
158.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
151.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
151.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
139.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
132.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
127.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
126.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
125.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
123.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
122.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
122.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
119.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
119.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
119.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
119.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
117.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
117.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
115.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
112.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
111.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
106.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
104.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
103.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
103.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
102.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
102.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
101.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
100.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
100.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
100.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
100.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
99.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
98.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
96.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
94.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
94.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
94.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
93.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
92.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
92.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
91.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
91.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
91.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
90.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
90.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
90.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
89.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
89.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
89.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
88.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
87.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
87.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
85.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
85.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
85.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
84.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
84.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
83.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
83.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
81.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
80.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
80.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
80.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
79.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
79.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
79.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
78.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
78.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
77.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
76.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
76.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
76.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
75.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
75.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
75.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
74.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
74.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
73.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
73.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
72.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
69.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
69.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
69.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
69.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
68.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
68.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
68.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
68.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
67.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
67.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
67.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
67.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
67.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
66.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
66.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
66.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
66.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
65.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
65.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
63.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
62.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
62.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
61.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
61.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
60.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
59.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
59.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
58.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
56.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
56.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
56.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
55.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
55.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
55.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
54.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
53.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
53.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
51.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
51.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
51.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
50.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
50.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
49.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
49.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
47.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
47.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
47.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
47.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
46.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
46.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
45.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
45.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
44.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
43.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
43.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
40.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
38.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
34.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
33.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
32.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
28.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
28.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
25.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
22.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
1.5
471
Tumor
1.4
527
Tumor
1.1
343
Tumor
1.0
395
Tumor
1.0
421
Tumor
1.0
221
Tumor
0.8
451
Tumor
0.8
433
Tumor
0.8
1025
Tumor
0.8
617
Tumor
0.7
445
Tumor
0.7
557
Tumor
0.7
857
Tumor
0.7
271
Tumor
0.6
171
Tumor
0.6
563
Tumor
0.6
975
Tumor
0.6
223
Tumor
0.6
627
Tumor
0.5
745
Tumor
0.5
185
Tumor
0.5
721
Tumor
0.4
147
Tumor
0.4
231
Tumor
0.4
268
Normal
0.4
977
Tumor
0.4
493
Tumor
0.4
685
Tumor
0.4
515
Tumor
0.4
112
Tumor
0.4
777
Tumor
0.4
477
Tumor
0.4
137
Tumor
0.4
913
Tumor
0.3
124
Normal
0.3
443
Tumor
0.3
697
Tumor
0.3
261
Tumor
0.3
136
Normal
0.3
297
Tumor
0.3
383
Tumor
0.3
145
Tumor
0.3
461
Tumor
0.3
641
Tumor
0.2
114
Normal
0.2
111
Normal
0.2
188
Normal
0.2
432
Normal
0.2
573
Tumor
0.2
162
Normal
0.2
911
Tumor
0.2
361
Tumor
0.2
444
Normal
0.2
823
Tumor
0.2
567
Tumor
0.2
481
Tumor
0.2
125
Tumor
0.2
755
Tumor
0.2
723
Tumor
0.2
478
Normal
0.2
483
Tumor
0.2
467
Tumor
0.2
415
Tumor
0.2
814
Normal
0.1
258
Normal
0.1
272
Normal
0.1
428
Normal
0.1
278
Normal
0.1
195
Tumor
0.1
462
Normal
0.1
277
Tumor
0.1
312
Normal
0.1
874
Normal
0.1
284
Normal
0.1
746
Normal
0.1
824
Normal
0.1
881
Tumor
0.1
434
Normal
0.1
217
Tumor
0.1
482
Normal
0.1
436
Normal
0.1
341
Tumor
0.1
328
Normal
0.1
858
Normal
0.1
172
Normal
0.1
737
Tumor
0.1
744
Normal
0.1
222
Normal
0.1
366
Normal
0.1
362
Normal
0.1
464
Normal
0.1
816
Normal
0.1
363
Tumor
0.1
456
Normal
0.1
618
Normal
0.1
132
Normal
0.1
388
Normal
0.1
916
Normal
0.1
212
Normal
0.1
616
Normal
0.1
262
Normal
0.1
715
Tumor
0.1
126
Normal
0.1
553
Tumor
0.0
615
Tumor
0.0
146
Normal
0.0
954
Normal
0.0
128
Normal
0.0
716
Normal
0.0
123
Tumor
0.0
455
Tumor
0.0
742
Normal
0.0
1042
Normal
0.0
354
Normal
0.0
955
Tumor
0.0
952
Normal
0.0
257
Tumor
0.0
127
Tumor
0.0
386
Normal
0.0
384
Normal
0.0
365
Tumor
0.0
353
Tumor
0.0
978
Normal
0.0
956
Normal
0.0
446
Normal
0.0
728
Normal
0.0
423
Tumor
0.0
135
Tumor
0.0
342
Normal
0.0
951
Tumor
0.0
647
Tumor
0.0
394
Normal
0.0
528
Normal
0.0
635
Tumor
0.0
148
Normal
0.0
571
Tumor
0.0
883
Tumor
0.0
914
Normal
0.0
422
Normal
0.0
498
Normal
0.0
862
Normal
0.0
738
Normal
0.0
357
Tumor
0.0
786
Normal
0.0
1022
Normal
0.0
224
Normal
0.0
813
Tumor
0.0
313
Tumor
0.0
878
Normal
0.0
1021
Tumor
0.0
298
Normal
0.0
187
Tumor
0.0
452
Normal
0.0
392
Normal
-0.1
472
Normal
-0.1
722
Normal
-0.1
213
Tumor
-0.1
666
Normal
-0.1
314
Normal
-0.1
358
Normal
-0.1
466
Normal
-0.1
963
Tumor
-0.1
817
Tumor
-0.1
426
Normal
-0.1
396
Normal
-0.1
873
Tumor
-0.1
142
Normal
-0.1
191
Tumor
-0.1
664
Normal
-0.1
968
Normal
-0.1
1015
Tumor
-0.1
648
Normal
-0.1
861
Tumor
-0.1
344
Normal
-0.1
713
Tumor
-0.1
416
Normal
-0.1
882
Normal
-0.1
866
Normal
-0.1
671
Tumor
-0.1
778
Normal
-0.1
192
Normal
-0.1
545
Tumor
-0.1
943
Tumor
-0.1
494
Normal
-0.1
868
Normal
-0.1
424
Normal
-0.1
534
Normal
-0.1
364
Normal
-0.1
741
Tumor
-0.1
917
Tumor
-0.1
818
Normal
-0.1
884
Normal
-0.1
488
Normal
-0.1
554
Normal
-0.1
228
Normal
-0.1
425
Tumor
-0.1
912
Normal
-0.1
474
Normal
-0.1
218
Normal
-0.1
487
Tumor
-0.2
376
Normal
-0.2
492
Normal
-0.2
138
Normal
-0.2
514
Normal
-0.2
214
Normal
-0.2
131
Tumor
-0.2
413
Tumor
-0.2
1014
Normal
-0.2
283
Tumor
-0.2
232
Normal
-0.2
1046
Normal
-0.2
356
Normal
-0.2
938
Normal
-0.2
331
Tumor
-0.2
352
Normal
-0.2
1044
Normal
-0.2
852
Normal
-0.2
524
Normal
-0.2
533
Tumor
-0.2
1016
Normal
-0.2
1028
Normal
-0.2
368
Normal
-0.2
642
Normal
-0.2
964
Normal
-0.2
756
Normal
-0.2
743
Tumor
-0.2
925
Tumor
-0.2
918
Normal
-0.2
662
Normal
-0.2
412
Normal
-0.2
926
Normal
-0.2
686
Normal
-0.2
976
Normal
-0.2
448
Normal
-0.2
196
Normal
-0.2
516
Normal
-0.2
447
Tumor
-0.2
1027
Tumor
-0.2
696
Normal
-0.2
473
Tumor
-0.2
435
Tumor
-0.2
966
Normal
-0.2
186
Normal
-0.2
864
Normal
-0.3
867
Tumor
-0.3
141
Tumor
-0.3
332
Normal
-0.3
286
Normal
-0.3
564
Normal
-0.3
574
Normal
-0.3
1043
Tumor
-0.3
661
Tumor
-0.3
468
Normal
-0.3
387
Tumor
-0.3
724
Normal
-0.3
636
Normal
-0.3
526
Normal
-0.3
518
Normal
-0.3
161
Tumor
-0.3
414
Normal
-0.3
785
Tumor
-0.3
513
Tumor
-0.3
311
Tumor
-0.3
944
Normal
-0.3
953
Tumor
-0.3
698
Normal
-0.3
922
Normal
-0.3
568
Normal
-0.3
924
Normal
-0.3
375
Tumor
-0.3
227
Tumor
-0.3
546
Normal
-0.3
984
Normal
-0.3
1026
Normal
-0.3
538
Normal
-0.3
628
Normal
-0.3
921
Tumor
-0.3
385
Tumor
-0.3
714
Normal
-0.3
327
Tumor
-0.3
497
Tumor
-0.3
431
Tumor
-0.4
982
Normal
-0.4
484
Normal
-0.4
1041
Tumor
-0.4
1031
Tumor
-0.4
958
Normal
-0.4
663
Tumor
-0.4
558
Normal
-0.4
525
Tumor
-0.4
672
Normal
-0.4
915
Tumor
-0.4
267
Tumor
-0.4
113
Tumor
-0.4
491
Tumor
-0.4
355
Tumor
-0.4
1013
Tumor
-0.4
937
Tumor
-0.4
537
Tumor
-0.5
572
Normal
-0.5
665
Tumor
-0.5
851
Tumor
-0.5
393
Tumor
-0.5
923
Tumor
-0.5
1032
Normal
-0.5
517
Tumor
-0.5
367
Tumor
-0.5
536
Normal
-0.5
1045
Tumor
-0.5
427
Tumor
-0.6
391
Tumor
-0.6
411
Tumor
-0.6
465
Tumor
-0.6
463
Tumor
-0.6
815
Tumor
-0.6
285
Tumor
-0.6
523
Tumor
-0.6
983
Tumor
-0.6
211
Tumor
-0.6
351
Tumor
-0.7
877
Tumor
-0.7
981
Tumor
-0.7
965
Tumor
-0.7
727
Tumor
-0.8
695
Tumor
-0.8
865
Tumor
-0.9
957
Tumor
-0.9
967
Tumor
-1.0
535
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
