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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
141.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
113.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
86.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
84.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
76.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
73.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
69.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
64.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
55.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
54.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
53.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
52.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
51.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
51.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
51.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
49.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
48.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
47.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
46.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
46.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
46.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
45.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
45.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
44.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
40.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
40.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
39.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
39.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
37.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
35.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
34.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
33.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
33.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
32.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
32.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
31.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
30.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
29.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
29.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
28.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
28.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
27.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
27.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
26.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
25.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
24.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
24.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
23.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
22.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
21.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
21.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
18.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
17.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
16.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
15.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
14.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
60.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
54.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
49.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
47.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
42.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
36.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
36.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
35.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
35.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
33.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
30.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
29.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
24.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
24.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
24.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
23.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
22.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
21.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
19.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
18.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
15.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
1.3
571
Tumor
1.2
393
Tumor
1.2
695
Tumor
1.1
867
Tumor
1.0
1027
Tumor
1.0
465
Tumor
1.0
741
Tumor
1.0
922
Normal
0.8
745
Tumor
0.8
488
Normal
0.7
924
Normal
0.7
923
Tumor
0.7
873
Tumor
0.7
435
Tumor
0.7
953
Tumor
0.7
231
Tumor
0.7
128
Normal
0.6
426
Normal
0.6
1045
Tumor
0.6
698
Normal
0.6
944
Normal
0.6
1032
Normal
0.6
967
Tumor
0.6
746
Normal
0.6
727
Tumor
0.6
356
Normal
0.6
466
Normal
0.5
344
Normal
0.5
716
Normal
0.5
414
Normal
0.5
361
Tumor
0.5
756
Normal
0.5
636
Normal
0.5
517
Tumor
0.5
513
Tumor
0.5
918
Normal
0.5
1022
Normal
0.5
546
Normal
0.5
618
Normal
0.5
342
Normal
0.5
957
Tumor
0.5
686
Normal
0.5
1043
Tumor
0.5
332
Normal
0.5
958
Normal
0.5
341
Tumor
0.5
278
Normal
0.5
858
Normal
0.5
483
Tumor
0.5
818
Normal
0.5
968
Normal
0.5
516
Normal
0.5
186
Normal
0.5
127
Tumor
0.4
352
Normal
0.4
564
Normal
0.4
462
Normal
0.4
926
Normal
0.4
232
Normal
0.4
554
Normal
0.4
314
Normal
0.4
864
Normal
0.4
484
Normal
0.4
468
Normal
0.4
357
Tumor
0.4
722
Normal
0.4
1041
Tumor
0.4
124
Normal
0.4
1044
Normal
0.4
981
Tumor
0.4
572
Normal
0.4
568
Normal
0.4
984
Normal
0.4
526
Normal
0.4
452
Normal
0.4
912
Normal
0.4
882
Normal
0.4
574
Normal
0.4
786
Normal
0.4
147
Tumor
0.4
214
Normal
0.4
738
Normal
0.4
257
Tumor
0.4
298
Normal
0.4
491
Tumor
0.3
494
Normal
0.3
487
Tumor
0.3
423
Tumor
0.3
172
Normal
0.3
328
Normal
0.3
534
Normal
0.3
852
Normal
0.3
714
Normal
0.3
685
Tumor
0.3
1046
Normal
0.3
672
Normal
0.3
911
Tumor
0.3
627
Tumor
0.3
354
Normal
0.3
1013
Tumor
0.3
558
Normal
0.3
358
Normal
0.3
778
Normal
0.3
114
Normal
0.3
364
Normal
0.3
355
Tumor
0.3
742
Normal
0.3
196
Normal
0.3
664
Normal
0.3
648
Normal
0.3
132
Normal
0.3
448
Normal
0.3
1014
Normal
0.3
111
Normal
0.3
868
Normal
0.3
696
Normal
0.3
261
Tumor
0.3
954
Normal
0.3
428
Normal
0.3
412
Normal
0.3
411
Tumor
0.3
424
Normal
0.3
472
Normal
0.3
112
Tumor
0.3
394
Normal
0.3
464
Normal
0.3
227
Tumor
0.2
474
Normal
0.2
142
Normal
0.2
744
Normal
0.2
1016
Normal
0.2
518
Normal
0.2
976
Normal
0.2
615
Tumor
0.2
955
Tumor
0.2
162
Normal
0.2
481
Tumor
0.2
1028
Normal
0.2
964
Normal
0.2
982
Normal
0.2
138
Normal
0.2
866
Normal
0.2
824
Normal
0.2
1026
Normal
0.2
952
Normal
0.2
862
Normal
0.2
1042
Normal
0.2
616
Normal
0.2
914
Normal
0.2
456
Normal
0.2
218
Normal
0.2
723
Tumor
0.2
146
Normal
0.2
396
Normal
0.2
362
Normal
0.2
628
Normal
0.2
286
Normal
0.1
224
Normal
0.1
951
Tumor
0.1
642
Normal
0.1
514
Normal
0.1
376
Normal
0.1
728
Normal
0.1
258
Normal
0.1
388
Normal
0.1
392
Normal
0.1
662
Normal
0.1
874
Normal
0.1
528
Normal
0.1
865
Tumor
0.1
482
Normal
0.1
145
Tumor
0.1
524
Normal
0.1
473
Tumor
0.1
384
Normal
0.1
148
Normal
0.1
915
Tumor
0.1
446
Normal
0.1
538
Normal
0.1
956
Normal
0.1
938
Normal
0.1
525
Tumor
0.1
1015
Tumor
0.1
755
Tumor
0.1
416
Normal
0.1
883
Tumor
0.1
161
Tumor
0.1
884
Normal
0.1
878
Normal
0.1
222
Normal
0.1
262
Normal
0.1
966
Normal
0.1
557
Tumor
0.1
126
Normal
0.1
743
Tumor
0.1
434
Normal
0.1
368
Normal
0.1
515
Tumor
0.1
816
Normal
0.1
422
Normal
0.1
553
Tumor
0.0
212
Normal
0.0
713
Tumor
0.0
863
Tumor
0.0
647
Tumor
0.0
916
Normal
0.0
635
Tumor
0.0
432
Normal
0.0
436
Normal
0.0
312
Normal
0.0
721
Tumor
0.0
785
Tumor
0.0
925
Tumor
0.0
228
Normal
0.0
365
Tumor
0.0
421
Tumor
0.0
666
Normal
0.0
415
Tumor
0.0
1031
Tumor
0.0
353
Tumor
0.0
963
Tumor
0.0
498
Normal
0.0
284
Normal
0.0
313
Tumor
0.0
136
Normal
0.0
777
Tumor
-0.1
1025
Tumor
-0.1
272
Normal
-0.1
433
Tumor
-0.1
1021
Tumor
-0.1
277
Tumor
-0.1
567
Tumor
-0.1
492
Normal
-0.1
478
Normal
-0.1
387
Tumor
-0.1
192
Normal
-0.1
217
Tumor
-0.1
267
Tumor
-0.1
861
Tumor
-0.1
271
Tumor
-0.1
563
Tumor
-0.1
445
Tumor
-0.1
268
Normal
-0.2
386
Normal
-0.2
737
Tumor
-0.2
425
Tumor
-0.2
327
Tumor
-0.2
943
Tumor
-0.2
536
Normal
-0.2
366
Normal
-0.2
537
Tumor
-0.2
443
Tumor
-0.2
188
Normal
-0.2
663
Tumor
-0.2
913
Tumor
-0.2
427
Tumor
-0.2
857
Tumor
-0.2
195
Tumor
-0.2
213
Tumor
-0.2
363
Tumor
-0.2
171
Tumor
-0.2
814
Normal
-0.2
813
Tumor
-0.2
221
Tumor
-0.3
493
Tumor
-0.3
461
Tumor
-0.3
431
Tumor
-0.3
391
Tumor
-0.3
113
Tumor
-0.3
724
Normal
-0.3
978
Normal
-0.3
185
Tumor
-0.3
413
Tumor
-0.3
444
Normal
-0.3
617
Tumor
-0.3
285
Tumor
-0.3
187
Tumor
-0.4
823
Tumor
-0.4
451
Tumor
-0.4
715
Tumor
-0.4
641
Tumor
-0.4
471
Tumor
-0.4
141
Tumor
-0.4
921
Tumor
-0.4
937
Tumor
-0.4
131
Tumor
-0.4
697
Tumor
-0.4
463
Tumor
-0.4
297
Tumor
-0.4
223
Tumor
-0.4
665
Tumor
-0.5
573
Tumor
-0.5
533
Tumor
-0.5
191
Tumor
-0.5
137
Tumor
-0.5
851
Tumor
-0.5
975
Tumor
-0.5
965
Tumor
-0.5
527
Tumor
-0.5
977
Tumor
-0.5
351
Tumor
-0.6
523
Tumor
-0.6
343
Tumor
-0.6
125
Tumor
-0.6
497
Tumor
-0.6
135
Tumor
-0.6
123
Tumor
-0.6
671
Tumor
-0.6
881
Tumor
-0.6
447
Tumor
-0.7
383
Tumor
-0.7
917
Tumor
-0.7
877
Tumor
-0.7
535
Tumor
-0.7
367
Tumor
-0.7
467
Tumor
-0.8
455
Tumor
-0.8
283
Tumor
-0.8
375
Tumor
-0.8
311
Tumor
-0.8
395
Tumor
-0.8
331
Tumor
-0.9
817
Tumor
-0.9
545
Tumor
-0.9
815
Tumor
-1.0
983
Tumor
-1.0
385
Tumor
-1.1
661
Tumor
-1.1
211
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
