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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPPL2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
33.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
30.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
30.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
22.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
19.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
17.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
17.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
10.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SPPL2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
53.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
46.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
44.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
30.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
23.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
17.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.4
221
Tumor
1.4
227
Tumor
1.2
743
Tumor
1.1
285
Tumor
1.1
363
Tumor
1.0
545
Tumor
1.0
641
Tumor
0.9
161
Tumor
0.9
125
Tumor
0.9
223
Tumor
0.8
713
Tumor
0.8
195
Tumor
0.7
573
Tumor
0.7
451
Tumor
0.7
365
Tumor
0.6
865
Tumor
0.6
463
Tumor
0.5
923
Tumor
0.5
297
Tumor
0.5
368
Normal
0.5
271
Tumor
0.5
432
Normal
0.5
877
Tumor
0.5
367
Tumor
0.5
113
Tumor
0.5
393
Tumor
0.5
917
Tumor
0.5
187
Tumor
0.5
967
Tumor
0.5
446
Normal
0.5
384
Normal
0.5
383
Tumor
0.5
395
Tumor
0.5
943
Tumor
0.5
277
Tumor
0.4
425
Tumor
0.4
211
Tumor
0.4
863
Tumor
0.4
213
Tumor
0.4
192
Normal
0.4
386
Normal
0.4
375
Tumor
0.4
366
Normal
0.4
131
Tumor
0.4
388
Normal
0.4
617
Tumor
0.4
353
Tumor
0.4
137
Tumor
0.4
433
Tumor
0.4
411
Tumor
0.4
517
Tumor
0.4
394
Normal
0.3
881
Tumor
0.3
171
Tumor
0.3
444
Normal
0.3
671
Tumor
0.3
376
Normal
0.3
665
Tumor
0.3
396
Normal
0.3
188
Normal
0.3
114
Normal
0.3
361
Tumor
0.3
724
Normal
0.3
362
Normal
0.3
343
Tumor
0.3
135
Tumor
0.3
467
Tumor
0.3
428
Normal
0.3
217
Tumor
0.3
147
Tumor
0.3
497
Tumor
0.3
145
Tumor
0.3
283
Tumor
0.3
141
Tumor
0.3
191
Tumor
0.3
572
Normal
0.3
615
Tumor
0.3
816
Normal
0.3
124
Normal
0.3
857
Tumor
0.2
126
Normal
0.2
455
Tumor
0.2
568
Normal
0.2
331
Tumor
0.2
574
Normal
0.2
921
Tumor
0.2
1042
Normal
0.2
977
Tumor
0.2
737
Tumor
0.2
884
Normal
0.2
571
Tumor
0.2
815
Tumor
0.2
392
Normal
0.2
311
Tumor
0.2
564
Normal
0.2
445
Tumor
0.2
268
Normal
0.2
722
Normal
0.2
697
Tumor
0.2
261
Tumor
0.2
493
Tumor
0.2
755
Tumor
0.2
728
Normal
0.2
385
Tumor
0.2
128
Normal
0.2
616
Normal
0.2
434
Normal
0.2
523
Tumor
0.1
937
Tumor
0.1
138
Normal
0.1
356
Normal
0.1
723
Tumor
0.1
745
Tumor
0.1
427
Tumor
0.1
257
Tumor
0.1
412
Normal
0.1
391
Tumor
0.1
672
Normal
0.1
714
Normal
0.1
1015
Tumor
0.1
527
Tumor
0.1
914
Normal
0.1
286
Normal
0.1
882
Normal
0.1
911
Tumor
0.1
414
Normal
0.1
741
Tumor
0.1
685
Tumor
0.1
462
Normal
0.1
436
Normal
0.1
262
Normal
0.1
132
Normal
0.1
387
Tumor
0.1
1022
Normal
0.1
231
Tumor
0.1
422
Normal
0.1
756
Normal
0.0
172
Normal
0.0
913
Tumor
0.0
721
Tumor
0.0
148
Normal
0.0
868
Normal
0.0
218
Normal
0.0
224
Normal
0.0
696
Normal
0.0
267
Tumor
0.0
185
Tumor
0.0
112
Tumor
0.0
861
Tumor
0.0
464
Normal
0.0
196
Normal
0.0
715
Tumor
0.0
351
Tumor
0.0
528
Normal
0.0
716
Normal
0.0
978
Normal
0.0
461
Tumor
0.0
817
Tumor
0.0
416
Normal
0.0
127
Tumor
0.0
1032
Normal
0.0
618
Normal
0.0
661
Tumor
0.0
136
Normal
0.0
968
Normal
0.0
443
Tumor
0.0
851
Tumor
0.0
636
Normal
0.0
1031
Tumor
0.0
878
Normal
0.0
642
Normal
0.0
686
Normal
0.0
426
Normal
0.0
814
Normal
0.0
222
Normal
0.0
785
Tumor
0.0
298
Normal
0.0
284
Normal
0.0
514
Normal
0.0
332
Normal
0.0
424
Normal
0.0
664
Normal
0.0
647
Tumor
0.0
272
Normal
0.0
258
Normal
0.0
786
Normal
-0.1
212
Normal
-0.1
162
Normal
-0.1
628
Normal
-0.1
975
Tumor
-0.1
111
Normal
-0.1
964
Normal
-0.1
883
Tumor
-0.1
558
Normal
-0.1
487
Tumor
-0.1
1021
Tumor
-0.1
746
Normal
-0.1
663
Tumor
-0.1
452
Normal
-0.1
278
Normal
-0.1
1025
Tumor
-0.1
468
Normal
-0.1
228
Normal
-0.1
563
Tumor
-0.1
695
Tumor
-0.1
447
Tumor
-0.1
312
Normal
-0.1
314
Normal
-0.1
526
Normal
-0.1
466
Normal
-0.1
214
Normal
-0.1
435
Tumor
-0.1
358
Normal
-0.1
1041
Tumor
-0.1
186
Normal
-0.1
465
Tumor
-0.1
146
Normal
-0.1
813
Tumor
-0.1
915
Tumor
-0.1
415
Tumor
-0.1
328
Normal
-0.1
1027
Tumor
-0.1
627
Tumor
-0.1
738
Normal
-0.1
648
Normal
-0.1
852
Normal
-0.1
474
Normal
-0.1
1026
Normal
-0.1
456
Normal
-0.1
513
Tumor
-0.1
824
Normal
-0.1
944
Normal
-0.1
954
Normal
-0.1
912
Normal
-0.1
498
Normal
-0.1
976
Normal
-0.1
421
Tumor
-0.2
142
Normal
-0.2
557
Tumor
-0.2
778
Normal
-0.2
481
Tumor
-0.2
232
Normal
-0.2
916
Normal
-0.2
662
Normal
-0.2
327
Tumor
-0.2
354
Normal
-0.2
666
Normal
-0.2
423
Tumor
-0.2
1028
Normal
-0.2
534
Normal
-0.2
524
Normal
-0.2
1043
Tumor
-0.2
922
Normal
-0.2
918
Normal
-0.2
938
Normal
-0.2
491
Tumor
-0.2
823
Tumor
-0.2
951
Tumor
-0.2
471
Tumor
-0.2
873
Tumor
-0.2
866
Normal
-0.2
553
Tumor
-0.2
864
Normal
-0.2
515
Tumor
-0.2
494
Normal
-0.2
516
Normal
-0.2
727
Tumor
-0.2
518
Normal
-0.2
1045
Tumor
-0.2
777
Tumor
-0.2
431
Tumor
-0.2
482
Normal
-0.2
525
Tumor
-0.3
966
Normal
-0.3
1013
Tumor
-0.3
123
Tumor
-0.3
1046
Normal
-0.3
983
Tumor
-0.3
926
Normal
-0.3
955
Tumor
-0.3
635
Tumor
-0.3
963
Tumor
-0.3
981
Tumor
-0.3
357
Tumor
-0.3
364
Normal
-0.3
472
Normal
-0.3
483
Tumor
-0.3
1016
Normal
-0.3
488
Normal
-0.3
698
Normal
-0.3
355
Tumor
-0.3
952
Normal
-0.3
984
Normal
-0.3
352
Normal
-0.3
858
Normal
-0.3
742
Normal
-0.4
484
Normal
-0.4
1014
Normal
-0.4
313
Tumor
-0.4
341
Tumor
-0.4
956
Normal
-0.4
554
Normal
-0.4
953
Tumor
-0.4
546
Normal
-0.4
958
Normal
-0.4
448
Normal
-0.4
924
Normal
-0.4
533
Tumor
-0.4
818
Normal
-0.4
874
Normal
-0.5
473
Tumor
-0.5
965
Tumor
-0.5
862
Normal
-0.5
982
Normal
-0.5
567
Tumor
-0.5
344
Normal
-0.5
478
Normal
-0.5
1044
Normal
-0.5
492
Normal
-0.6
925
Tumor
-0.6
536
Normal
-0.6
744
Normal
-0.6
342
Normal
-0.6
867
Tumor
-0.6
538
Normal
-0.7
477
Tumor
-0.8
537
Tumor
-0.8
535
Tumor
-0.9
957
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
