MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.5 nTPM
HPA Brain:36.5 nTPM
GTEx:22.5 nTPM
FANTOM5:42.0 Scaled Tags Per Million
Pig:9.6 nTPM
Mouse:9.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 36.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.6
2019 Male, age 18, unknown 39.8
2586 Male, age 75, left hemisphere 39.6
1833 Male, age 53, unknown 34.7
2411 Female, age 72, unknown 33.0
1830 Male, age 51, unknown 32.0
2219 Male, age 76, both hemispheres 31.8
2828 Female, age 72, unknown 31.3
1870 Female, age 42, unknown 30.3
1827 Male, age 72, unknown 28.4
2666 Male, age 74, left hemisphere 25.0
Dorsal raphe nucleus
nTPM: 32.3
2750 Male, age 76, both hemispheres 34.9
2047 Male, age 72, unknown 33.6
1828 Male, age 53, unknown 33.0
2298 Female, age 72, unknown 31.8
2016 Female, age 72, unknown 28.2
Inferior colliculus
nTPM: 30.2
1848 Female, age 42, unknown 34.2
2849 Male, age 72, unknown 30.3
1890 Male, age 53, unknown 29.4
2097 Female, age 72, unknown 27.1
Median raphe nucleus
nTPM: 28.3
2220 Male, age 76, midline 28.3
Periaquaductal grey, anterior
nTPM: 32.2
2502 Female, age 75, unknown 32.8
1795 Male, age 51, unknown 32.6
1947 Male, age 18, unknown 31.4
Periaquaductal grey, dorsal
nTPM: 29.8
2464 Female, age 72, unknown 33.3
2850 Male, age 76, both hemispheres 31.1
1840 Male, age 53, unknown 28.1
1831 Male, age 72, unknown 26.6
Periaquaductal grey, lateral
nTPM: 33.8
2272 Male, age 74, both hemispheres 40.8
2140 Male, age 76, both hemispheres 33.5
2053 Male, age 18, unknown 27.0
Pretectal area
nTPM: 31.3
2667 Female, age 75, unknown 40.1
2273 Male, age 74, both hemispheres 36.7
2316 Male, age 76, right hemisphere 36.4
2007 Male, age 72, unknown 32.4
2224 Female, age 72, unknown 30.1
2407 Male, age 75, both hemispheres 30.0
1816 Male, age 51, unknown 28.5
1944 Female, age 72, unknown 28.2
1817 Female, age 42, unknown 27.8
2825 Male, age 18, unknown 27.8
1815 Male, age 53, unknown 25.8
Red nucleus
nTPM: 36.5
2227 Male, age 72, unknown 43.3
2769 Male, age 72, unknown 41.8
2823 Male, age 76, right hemisphere 41.0
1904 Male, age 53, unknown 39.8
2588 Male, age 74, left hemisphere 38.2
2785 Male, age 18, unknown 38.2
1954 Female, age 42, unknown 35.8
1821 Female, age 72, unknown 34.5
1865 Male, age 51, unknown 34.1
2503 Female, age 72, unknown 31.7
2584 Male, age 75, left hemisphere 31.3
2725 Female, age 75, unknown 28.1
Substantia nigra
nTPM: 28.7
2590 Female, age 75, unknown 32.0
1851 Male, age 51, unknown 31.8
1941 Male, age 53, unknown 31.2
2699 Male, age 18, unknown 30.8
1916 Female, age 42, unknown 29.5
2583 Male, age 75, right hemisphere 28.9
1889 Female, age 72, unknown 27.7
2665 Male, age 74, both hemispheres 27.1
2409 Female, age 72, unknown 24.4
2241 Male, age 72, unknown 23.2
Superior colliculus
nTPM: 30.3
2664 Male, age 75, both hemispheres 37.3
1995 Male, age 72, unknown 30.9
2087 Female, age 72, unknown 30.9
1839 Male, age 51, unknown 30.6
2261 Male, age 18, unknown 30.3
1895 Male, age 76, right hemisphere 30.2
1913 Female, age 42, unknown 29.2
2587 Male, age 74, left hemisphere 28.6
1796 Male, age 53, unknown 28.3
2668 Female, age 75, unknown 26.3
Ventral tegmental area
nTPM: 29.9
2223 Female, age 72, unknown 31.7
2021 Male, age 53, unknown 31.2
1942 Male, age 51, unknown 30.4
2218 Male, age 76, both hemispheres 30.2
2410 Female, age 72, unknown 28.5
1915 Female, age 42, unknown 27.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 22.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.5
Samples: 139

Max nTPM: 38.5
Min nTPM: 9.0
Std nTPM: 5.6
Median nTPM: 22.3
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 38.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 37.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 36.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 35.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 34.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 33.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 31.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 31.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 31.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 31.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 31.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.0
FF:10158-103A5 76 years, female 42.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 8.3
Min nTPM: 6.9
Sample A Female 7.7
Sample B Female 6.9
Sample C Male 7.2
Sample D Male 8.3
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 9.8
Min nTPM: 7.4
Sample A Female 9.6
Sample B Female 7.4
Sample C Male 9.8
Sample D Male 8.0
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 10.0
Min nTPM: 8.1
Sample B Female 8.1
Sample C Male 10.0
Sample D Male 8.6
Superior colliculi
nTPM: 9.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 9.0
Sample A Female 9.8
Sample B Female 9.5
Sample C Male 10.0
Sample D Male 9.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.6
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.2
Sample A Male 9.3
Sample B Male 9.5
Sample C Female 9.2
Sample D Female 10.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69407487 Antisense, RP_050414_01_G05, Mouse strain C57BL/6J (56 days, male) 0.7

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