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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
50.2
nTPM
HPA Brain:
102.6
nTPM
GTEx:
50.2
nTPM
FANTOM5:
222.9
Scaled Tags Per Million
Pig:
125.3
nTPM
Mouse:
151.3
nTPM
Allen mouse:
14.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 93.0
2219
Male, age 76, both hemispheres
155.5
2019
Male, age 18, unknown
106.3
2411
Female, age 72, unknown
100.6
1827
Male, age 72, unknown
87.6
2666
Male, age 74, left hemisphere
86.2
1833
Male, age 53, unknown
85.0
1870
Female, age 42, unknown
81.9
1830
Male, age 51, unknown
79.7
2828
Female, age 72, unknown
75.0
2586
Male, age 75, left hemisphere
71.8
Dorsal raphe nucleus nTPM: 83.1
2298
Female, age 72, unknown
101.5
2047
Male, age 72, unknown
84.4
1828
Male, age 53, unknown
83.6
2016
Female, age 72, unknown
77.2
2750
Male, age 76, both hemispheres
68.6
Inferior colliculus nTPM: 83.6
2097
Female, age 72, unknown
90.5
2849
Male, age 72, unknown
85.8
1848
Female, age 42, unknown
80.3
1890
Male, age 53, unknown
77.9
Median raphe nucleus nTPM: 102.0
2220
Male, age 76, midline
102.0
Periaquaductal grey, anterior nTPM: 81.5
1947
Male, age 18, unknown
84.6
1795
Male, age 51, unknown
81.1
2502
Female, age 75, unknown
78.8
Periaquaductal grey, dorsal nTPM: 84.2
1840
Male, age 53, unknown
91.8
2464
Female, age 72, unknown
88.6
1831
Male, age 72, unknown
79.2
2850
Male, age 76, both hemispheres
76.9
Periaquaductal grey, lateral nTPM: 78.7
2272
Male, age 74, both hemispheres
87.0
2053
Male, age 18, unknown
75.6
2140
Male, age 76, both hemispheres
73.5
Pretectal area nTPM: 102.6
2007
Male, age 72, unknown
125.2
1944
Female, age 72, unknown
121.4
1816
Male, age 51, unknown
117.2
1817
Female, age 42, unknown
115.9
2667
Female, age 75, unknown
109.8
1815
Male, age 53, unknown
102.4
2407
Male, age 75, both hemispheres
95.7
2224
Female, age 72, unknown
94.0
2273
Male, age 74, both hemispheres
90.8
2825
Male, age 18, unknown
80.5
2316
Male, age 76, right hemisphere
75.3
Red nucleus nTPM: 79.9
2785
Male, age 18, unknown
96.5
2584
Male, age 75, left hemisphere
86.3
2725
Female, age 75, unknown
84.3
1821
Female, age 72, unknown
84.2
2588
Male, age 74, left hemisphere
80.5
2503
Female, age 72, unknown
79.2
1954
Female, age 42, unknown
76.6
2769
Male, age 72, unknown
76.3
1865
Male, age 51, unknown
76.2
1904
Male, age 53, unknown
76.1
2227
Male, age 72, unknown
74.6
2823
Male, age 76, right hemisphere
67.4
Substantia nigra nTPM: 89.8
1941
Male, age 53, unknown
100.4
1889
Female, age 72, unknown
99.6
1916
Female, age 42, unknown
98.3
2409
Female, age 72, unknown
95.9
2241
Male, age 72, unknown
92.6
1851
Male, age 51, unknown
88.7
2583
Male, age 75, right hemisphere
84.2
2665
Male, age 74, both hemispheres
81.2
2590
Female, age 75, unknown
80.5
2699
Male, age 18, unknown
77.0
Superior colliculus nTPM: 85.2
2087
Female, age 72, unknown
106.8
1796
Male, age 53, unknown
89.4
1839
Male, age 51, unknown
87.8
2261
Male, age 18, unknown
87.2
2668
Female, age 75, unknown
84.8
1913
Female, age 42, unknown
82.8
1895
Male, age 76, right hemisphere
82.2
2587
Male, age 74, left hemisphere
80.8
1995
Male, age 72, unknown
76.7
2664
Male, age 75, both hemispheres
73.7
Ventral tegmental area nTPM: 79.8
2410
Female, age 72, unknown
94.2
1915
Female, age 42, unknown
84.7
1942
Male, age 51, unknown
79.7
2218
Male, age 76, both hemispheres
79.2
2021
Male, age 53, unknown
71.5
2223
Female, age 72, unknown
69.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
50.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 50.2
Samples: 139
Max nTPM: 381.2
Min nTPM: 19.7
Std nTPM: 47.1
Median nTPM: 38.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
381.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
353.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
217.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
165.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
141.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
126.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
121.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
92.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
91.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
87.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
86.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
86.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
86.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
85.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
83.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
77.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
71.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
70.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
68.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
64.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
61.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
61.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
60.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
60.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
57.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
57.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
56.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
55.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
55.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
53.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
53.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
52.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
50.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
50.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
49.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
49.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
48.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
48.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
48.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
48.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
47.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
47.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
47.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
46.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
45.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
45.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
45.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
44.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
44.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
44.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
44.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
44.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
43.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
43.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
43.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
43.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
41.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
41.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
41.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
41.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
40.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
40.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
40.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
40.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
39.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
39.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
39.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
38.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
38.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
37.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
37.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
36.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
36.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
36.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
36.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
35.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
35.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
35.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
35.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
34.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
34.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
34.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
34.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
33.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
33.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
33.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
33.1
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
32.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
32.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
32.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
32.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
32.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
31.7
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
31.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
31.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
31.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
30.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
30.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
30.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
30.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
30.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
29.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
29.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
29.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
29.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
29.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
29.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
29.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
28.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
28.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
28.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
28.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
28.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
27.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
27.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
27.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
26.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
26.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
25.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
25.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
25.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
24.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
24.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
24.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
23.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
23.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
22.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
22.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
22.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
22.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
20.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
19.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
151.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 151.2
Samples: 4
Max nTPM: 158.8
Min nTPM: 137.2
Sample A
Male
137.2
Sample B
Male
153.0
Sample C
Female
158.8
Sample D
Female
155.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.