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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
43.9
nTPM
HPA Brain:
93.6
nTPM
GTEx:
43.9
nTPM
FANTOM5:
104.2
Scaled Tags Per Million
Pig:
96.2
nTPM
Mouse:
104.9
nTPM
Allen mouse:
14.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA006148
Antibody HPA062857
Antibody CAB017441
Glial cells
Medium
Medium
Medium
Neuronal cells
Medium
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 81.5
2529
Female, age 94, left hemisphere
106.6
1855
Male, age 76, left hemisphere
82.3
1898
Male, age 80, left hemisphere
78.0
2621
Female, age 67, right hemisphere
77.2
2148
Female, age 91, left hemisphere
76.6
1911
Female, age 85, right hemisphere
68.4
Dentate gyrus nTPM: 89.2
2010
Male, age 76, both hemispheres
124.9
2530
Female, age 94, left hemisphere
89.8
1927
Female, age 91, both hemispheres
85.1
2528
Male, age 74, both hemispheres
84.9
2531
Female, age 67, both hemispheres
76.1
2246
Female, age 85, both hemispheres
74.1
Entorhinal gyrus nTPM: 75.2
1787
Male, age 76, left hemisphere
82.4
2117
Female, age 91, right hemisphere
79.2
2764
Male, age 80, right hemisphere
77.1
1938
Female, age 85, left hemisphere
76.2
2686
Male, age 75, right hemisphere
71.3
2613
Female, age 94, left hemisphere
64.7
Hippocampus, CA1 nTPM: 93.6
2045
Male, age 76, both hemispheres
154.1
2749
Male, age 80, left hemisphere
82.2
2527
Male, age 74, both hemispheres
78.5
1873
Female, age 85, both hemispheres
76.5
2082
Female, age 91, right hemisphere
76.5
Hippocampus, CA2 nTPM: 87.5
1892
Male, age 76, both hemispheres
125.4
2249
Male, age 74, both hemispheres
89.0
2437
Female, age 94, left hemisphere
87.9
1963
Male, age 80, left hemisphere
82.8
2113
Female, age 91, right hemisphere
73.8
1940
Female, age 85, left hemisphere
66.1
Hippocampus, CA3 nTPM: 81.8
1867
Male, age 76, both hemispheres
116.8
2436
Male, age 74, both hemispheres
88.9
2620
Female, age 94, left hemisphere
78.0
1891
Female, age 85, both hemispheres
71.4
2137
Male, age 80, left hemisphere
68.7
2861
Female, age 67, both hemispheres
67.2
Parahippocampal cortex nTPM: 84.3
2018
Male, age 76, both hemispheres
128.4
1990
Female, age 91, right hemisphere
85.8
1850
Male, age 80, both hemispheres
85.2
2532
Female, age 72, left hemisphere
83.2
2250
Female, age 67, right hemisphere
83.0
1933
Female, age 85, both hemispheres
81.4
2245
Female, age 91, both hemispheres
77.7
2692
Male, age 74, both hemispheres
76.1
2622
Female, age 67, right hemisphere
72.2
2693
Female, age 94, both hemispheres
69.5
Perirhinal gyrus nTPM: 85.4
2848
Male, age 76, right hemisphere
112.7
1841
Female, age 85, right hemisphere
84.2
1847
Female, age 91, left hemisphere
81.0
1794
Male, age 80, right hemisphere
75.0
2521
Female, age 94, right hemisphere
73.8
Subiculum nTPM: 89.9
2042
Male, age 76, both hemispheres
131.2
2438
Female, age 94, left hemisphere
91.0
2619
Male, age 74, both hemispheres
84.3
1901
Male, age 80, both hemispheres
80.4
1977
Female, age 85, both hemispheres
77.6
2729
Female, age 91, right hemisphere
75.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 43.9
Samples: 197
Max nTPM: 452.3
Min nTPM: 15.5
Std nTPM: 39.8
Median nTPM: 35.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
452.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
271.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
179.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
129.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
125.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
123.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
116.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
114.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
108.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
97.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
84.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
84.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
82.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
80.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
77.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
75.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
74.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
69.2
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
65.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
64.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
61.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
59.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
57.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
56.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
54.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
52.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
52.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
52.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
50.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
48.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
48.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
48.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
48.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
48.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
47.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
47.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
46.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
46.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
46.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
46.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
45.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
45.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
45.7
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
45.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
45.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
45.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
43.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
43.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
42.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
42.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
42.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
41.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
41.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
41.3
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
41.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
41.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
41.2
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
41.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
41.0
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
40.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
40.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
40.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
40.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
40.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
40.4
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
40.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
40.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
40.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
39.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
39.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
39.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
39.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
38.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
38.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
38.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
38.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
38.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
38.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
38.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
38.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
37.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
37.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
37.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
37.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
37.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
37.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
36.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
36.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
36.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
36.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
36.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
36.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
36.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
36.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
36.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
35.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
35.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
35.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
35.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
35.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
35.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
35.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
35.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
35.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
34.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
34.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
34.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
34.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
34.6
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
34.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
34.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
34.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
34.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
33.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
33.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
33.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
33.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
33.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
33.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
33.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
33.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
33.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
32.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
32.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
32.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
32.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
32.0
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
31.8
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
31.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
31.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
31.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
31.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
31.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
30.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
30.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
29.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
29.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
29.6
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
29.6
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
29.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
29.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
29.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
29.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
29.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
29.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
29.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
29.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
29.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
29.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
28.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
28.7
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
28.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
28.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
28.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
28.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
28.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
28.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
28.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
27.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
27.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
27.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
27.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
27.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
27.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
27.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
26.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
26.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
26.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
26.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
26.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
26.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
26.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
26.0
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
26.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
25.5
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
25.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
25.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
25.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
24.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
24.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
24.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
24.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
23.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
23.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
23.4
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
23.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
23.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
22.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
22.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
22.9
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
21.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
20.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
19.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
18.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
17.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
17.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
15.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 98.7
Samples: 4
Max nTPM: 102.4
Min nTPM: 95.1
Sample A
Male
97.1
Sample B
Male
100.3
Sample C
Female
102.4
Sample D
Female
95.1
Hippocampal formation nTPM: 104.9
Samples: 4
Max nTPM: 112.5
Min nTPM: 95.3
Sample A
Male
103.6
Sample B
Male
95.3
Sample C
Female
112.5
Sample D
Female
108.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.