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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLXND1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
392.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
162.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
80.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
74.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
66.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
64.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
61.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
56.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
55.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
51.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
50.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
47.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
46.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
45.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
44.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
44.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
43.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
41.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
40.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
40.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
28.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
26.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
25.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
25.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
24.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
23.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
18.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
18.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
17.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLXND1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.8
Number of samples
231
Samples
Sample
Description
TPM
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
47.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
32.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
25.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
0.9
983
Tumor
0.6
192
Normal
0.6
227
Tumor
0.6
344
Normal
0.6
713
Tumor
0.5
311
Tumor
0.5
376
Normal
0.5
536
Normal
0.5
951
Tumor
0.5
124
Normal
0.5
367
Tumor
0.5
368
Normal
0.4
125
Tumor
0.4
671
Tumor
0.4
553
Tumor
0.4
954
Normal
0.4
135
Tumor
0.4
331
Tumor
0.4
342
Normal
0.4
672
Normal
0.4
343
Tumor
0.4
444
Normal
0.4
363
Tumor
0.4
354
Normal
0.4
923
Tumor
0.4
498
Normal
0.4
817
Tumor
0.4
686
Normal
0.4
727
Tumor
0.3
1014
Normal
0.3
814
Normal
0.3
352
Normal
0.3
111
Normal
0.3
145
Tumor
0.3
146
Normal
0.3
213
Tumor
0.3
271
Tumor
0.3
744
Normal
0.3
384
Normal
0.3
1043
Tumor
0.3
421
Tumor
0.3
383
Tumor
0.3
365
Tumor
0.3
517
Tumor
0.3
375
Tumor
0.3
984
Normal
0.3
943
Tumor
0.3
471
Tumor
0.3
666
Normal
0.3
434
Normal
0.3
572
Normal
0.3
358
Normal
0.3
268
Normal
0.3
353
Tumor
0.3
391
Tumor
0.3
921
Tumor
0.3
778
Normal
0.3
573
Tumor
0.2
218
Normal
0.2
563
Tumor
0.2
142
Normal
0.2
126
Normal
0.2
878
Normal
0.2
161
Tumor
0.2
1016
Normal
0.2
392
Normal
0.2
851
Tumor
0.2
283
Tumor
0.2
332
Normal
0.2
217
Tumor
0.2
447
Tumor
0.2
965
Tumor
0.2
141
Tumor
0.2
463
Tumor
0.2
538
Normal
0.2
815
Tumor
0.2
478
Normal
0.2
557
Tumor
0.2
617
Tumor
0.2
786
Normal
0.2
272
Normal
0.2
186
Normal
0.2
922
Normal
0.2
424
Normal
0.2
413
Tumor
0.2
641
Tumor
0.2
926
Normal
0.2
387
Tumor
0.2
138
Normal
0.2
535
Tumor
0.2
187
Tumor
0.2
963
Tumor
0.2
132
Normal
0.2
312
Normal
0.2
195
Tumor
0.2
361
Tumor
0.2
883
Tumor
0.2
627
Tumor
0.2
414
Normal
0.2
433
Tumor
0.2
818
Normal
0.2
467
Tumor
0.2
823
Tumor
0.2
952
Normal
0.2
446
Normal
0.2
362
Normal
0.2
648
Normal
0.2
944
Normal
0.2
914
Normal
0.2
188
Normal
0.2
185
Tumor
0.2
568
Normal
0.2
1044
Normal
0.2
196
Normal
0.2
813
Tumor
0.2
148
Normal
0.2
466
Normal
0.1
298
Normal
0.1
426
Normal
0.1
262
Normal
0.1
824
Normal
0.1
136
Normal
0.1
664
Normal
0.1
574
Normal
0.1
396
Normal
0.1
366
Normal
0.1
696
Normal
0.1
636
Normal
0.1
978
Normal
0.1
191
Tumor
0.1
882
Normal
0.1
172
Normal
0.1
428
Normal
0.1
232
Normal
0.1
746
Normal
0.1
388
Normal
0.1
526
Normal
0.1
364
Normal
0.1
385
Tumor
0.1
224
Normal
0.1
916
Normal
0.1
137
Tumor
0.1
214
Normal
0.1
866
Normal
0.1
1045
Tumor
0.1
472
Normal
0.1
394
Normal
0.1
881
Tumor
0.1
258
Normal
0.1
162
Normal
0.1
816
Normal
0.1
1031
Tumor
0.1
1028
Normal
0.1
868
Normal
0.1
884
Normal
0.1
571
Tumor
0.1
462
Normal
0.1
356
Normal
0.1
436
Normal
0.1
525
Tumor
0.1
415
Tumor
0.1
554
Normal
0.1
1025
Tumor
0.1
976
Normal
0.1
864
Normal
0.1
698
Normal
0.1
422
Normal
0.1
481
Tumor
0.1
716
Normal
0.1
432
Normal
0.1
412
Normal
0.1
482
Normal
0.1
355
Tumor
0.1
491
Tumor
0.1
455
Tumor
0.1
642
Normal
0.1
456
Normal
0.1
286
Normal
0.1
524
Normal
0.1
128
Normal
0.1
982
Normal
0.1
488
Normal
0.1
874
Normal
0.1
724
Normal
0.1
386
Normal
0.1
435
Tumor
0.1
558
Normal
0.1
228
Normal
0.1
514
Normal
0.1
964
Normal
0.0
722
Normal
0.0
647
Tumor
0.0
723
Tumor
0.0
721
Tumor
0.0
918
Normal
0.0
534
Normal
0.0
147
Tumor
0.0
662
Normal
0.0
862
Normal
0.0
222
Normal
0.0
628
Normal
0.0
742
Normal
0.0
114
Normal
0.0
314
Normal
0.0
423
Tumor
0.0
537
Tumor
0.0
493
Tumor
0.0
212
Normal
0.0
1015
Tumor
0.0
297
Tumor
0.0
1046
Normal
0.0
938
Normal
0.0
461
Tumor
0.0
416
Normal
0.0
924
Normal
0.0
546
Normal
0.0
477
Tumor
0.0
714
Normal
0.0
211
Tumor
0.0
618
Normal
0.0
284
Normal
0.0
452
Normal
0.0
915
Tumor
0.0
743
Tumor
0.0
513
Tumor
0.0
1042
Normal
0.0
327
Tumor
0.0
516
Normal
0.0
737
Tumor
0.0
697
Tumor
0.0
863
Tumor
0.0
728
Normal
0.0
857
Tumor
0.0
564
Normal
0.0
261
Tumor
0.0
328
Normal
0.0
468
Normal
0.0
913
Tumor
0.0
113
Tumor
0.0
1032
Normal
0.0
171
Tumor
0.0
615
Tumor
0.0
616
Normal
0.0
745
Tumor
0.0
738
Normal
0.0
492
Normal
0.0
858
Normal
0.0
464
Normal
0.0
912
Normal
0.0
127
Tumor
0.0
956
Normal
0.0
1026
Normal
0.0
966
Normal
0.0
484
Normal
0.0
448
Normal
0.0
351
Tumor
0.0
968
Normal
0.0
567
Tumor
-0.1
1021
Tumor
-0.1
975
Tumor
-0.1
474
Normal
-0.1
958
Normal
-0.1
785
Tumor
-0.1
341
Tumor
-0.1
357
Tumor
-0.1
867
Tumor
-0.1
257
Tumor
-0.1
223
Tumor
-0.1
1022
Normal
-0.1
861
Tumor
-0.1
528
Normal
-0.1
494
Normal
-0.1
545
Tumor
-0.1
715
Tumor
-0.1
877
Tumor
-0.1
852
Normal
-0.1
917
Tumor
-0.1
518
Normal
-0.1
955
Tumor
-0.1
451
Tumor
-0.1
285
Tumor
-0.1
981
Tumor
-0.1
231
Tumor
-0.1
756
Normal
-0.1
221
Tumor
-0.1
977
Tumor
-0.1
313
Tumor
-0.2
395
Tumor
-0.2
277
Tumor
-0.2
427
Tumor
-0.2
123
Tumor
-0.2
267
Tumor
-0.2
411
Tumor
-0.2
445
Tumor
-0.2
112
Tumor
-0.2
665
Tumor
-0.2
278
Normal
-0.2
967
Tumor
-0.2
937
Tumor
-0.2
695
Tumor
-0.2
473
Tumor
-0.2
925
Tumor
-0.2
777
Tumor
-0.3
957
Tumor
-0.3
515
Tumor
-0.3
873
Tumor
-0.3
755
Tumor
-0.3
663
Tumor
-0.3
131
Tumor
-0.3
741
Tumor
-0.4
497
Tumor
-0.4
393
Tumor
-0.4
533
Tumor
-0.4
431
Tumor
-0.4
1041
Tumor
-0.4
443
Tumor
-0.4
483
Tumor
-0.4
465
Tumor
-0.5
425
Tumor
-0.5
953
Tumor
-0.5
685
Tumor
-0.5
1013
Tumor
-0.5
523
Tumor
-0.6
911
Tumor
-0.6
527
Tumor
-0.6
1027
Tumor
-0.6
865
Tumor
-0.6
635
Tumor
-0.7
487
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
