MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.7 nTPM
HPA Brain:64.1 nTPM
GTEx:28.7 nTPM
FANTOM5:55.3 Scaled Tags Per Million
Pig:42.5 nTPM
Mouse:98.8 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.5
1833 Male, age 53, unknown 65.2
1870 Female, age 42, unknown 61.5
2019 Male, age 18, unknown 60.6
2666 Male, age 74, left hemisphere 58.1
1830 Male, age 51, unknown 58.0
2411 Female, age 72, unknown 58.0
2828 Female, age 72, unknown 57.0
1827 Male, age 72, unknown 56.5
2586 Male, age 75, left hemisphere 47.2
2219 Male, age 76, both hemispheres 43.0
Dorsal raphe nucleus
nTPM: 61.6
2298 Female, age 72, unknown 67.7
2047 Male, age 72, unknown 63.1
2016 Female, age 72, unknown 61.8
1828 Male, age 53, unknown 57.9
2750 Male, age 76, both hemispheres 57.5
Inferior colliculus
nTPM: 57.9
2097 Female, age 72, unknown 62.3
2849 Male, age 72, unknown 57.9
1890 Male, age 53, unknown 56.8
1848 Female, age 42, unknown 54.8
Median raphe nucleus
nTPM: 64.1
2220 Male, age 76, midline 64.1
Periaquaductal grey, anterior
nTPM: 51.4
1947 Male, age 18, unknown 53.8
1795 Male, age 51, unknown 52.2
2502 Female, age 75, unknown 48.2
Periaquaductal grey, dorsal
nTPM: 53.8
2464 Female, age 72, unknown 56.0
2850 Male, age 76, both hemispheres 53.7
1831 Male, age 72, unknown 52.8
1840 Male, age 53, unknown 52.5
Periaquaductal grey, lateral
nTPM: 57.8
2272 Male, age 74, both hemispheres 61.6
2140 Male, age 76, both hemispheres 57.5
2053 Male, age 18, unknown 54.3
Pretectal area
nTPM: 57.0
2273 Male, age 74, both hemispheres 64.5
1817 Female, age 42, unknown 60.8
2825 Male, age 18, unknown 59.1
1815 Male, age 53, unknown 57.3
2007 Male, age 72, unknown 55.9
2224 Female, age 72, unknown 55.9
2407 Male, age 75, both hemispheres 55.7
1816 Male, age 51, unknown 54.9
2316 Male, age 76, right hemisphere 54.6
2667 Female, age 75, unknown 54.3
1944 Female, age 72, unknown 53.7
Red nucleus
nTPM: 54.9
1821 Female, age 72, unknown 62.1
2584 Male, age 75, left hemisphere 59.3
1954 Female, age 42, unknown 57.4
2725 Female, age 75, unknown 56.2
1904 Male, age 53, unknown 56.1
2785 Male, age 18, unknown 55.7
2823 Male, age 76, right hemisphere 54.9
2227 Male, age 72, unknown 53.2
2769 Male, age 72, unknown 52.8
1865 Male, age 51, unknown 52.2
2503 Female, age 72, unknown 52.0
2588 Male, age 74, left hemisphere 46.9
Substantia nigra
nTPM: 59.9
2590 Female, age 75, unknown 68.3
2583 Male, age 75, right hemisphere 64.7
1916 Female, age 42, unknown 64.2
2241 Male, age 72, unknown 63.9
1851 Male, age 51, unknown 60.0
1889 Female, age 72, unknown 59.6
2665 Male, age 74, both hemispheres 56.8
2699 Male, age 18, unknown 56.3
1941 Male, age 53, unknown 53.6
2409 Female, age 72, unknown 51.2
Superior colliculus
nTPM: 54.1
2587 Male, age 74, left hemisphere 66.4
1839 Male, age 51, unknown 58.8
1995 Male, age 72, unknown 53.9
2087 Female, age 72, unknown 53.9
1913 Female, age 42, unknown 53.7
1796 Male, age 53, unknown 53.3
2668 Female, age 75, unknown 51.2
2261 Male, age 18, unknown 50.9
1895 Male, age 76, right hemisphere 49.8
2664 Male, age 75, both hemispheres 49.3
Ventral tegmental area
nTPM: 60.1
2410 Female, age 72, unknown 67.3
1915 Female, age 42, unknown 62.9
2021 Male, age 53, unknown 62.4
2218 Male, age 76, both hemispheres 57.5
1942 Male, age 51, unknown 56.6
2223 Female, age 72, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 49.4
Min nTPM: 13.1
Std nTPM: 7.1
Median nTPM: 28.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 49.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 46.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 46.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 42.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 41.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 41.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 40.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 40.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 40.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 40.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 39.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.3
FF:10158-103A5 76 years, female 55.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 42.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.5
Samples: 4

Max nTPM: 44.9
Min nTPM: 33.3
Sample A Female 44.9
Sample B Female 33.3
Sample C Male 43.6
Sample D Male 36.1
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 51.1
Min nTPM: 34.0
Sample A Female 51.1
Sample B Female 34.0
Sample C Male 44.4
Sample D Male 40.4
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 43.2
Min nTPM: 30.7
Sample B Female 31.4
Sample C Male 43.2
Sample D Male 30.7
Superior colliculi
nTPM: 40.2
Samples: 4

Max nTPM: 44.7
Min nTPM: 31.0
Sample A Female 43.9
Sample B Female 31.0
Sample C Male 44.7
Sample D Male 41.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 98.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.8
Samples: 4

Max nTPM: 103.3
Min nTPM: 96.8
Sample A Male 97.3
Sample B Male 103.3
Sample C Female 97.9
Sample D Female 96.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
69134268 Antisense, RP_050321_02_F06, Mouse strain C57BL/6J (56 days, male) 1.3

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