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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX11 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
13.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX11 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
2.0
421
Tumor
1.5
192
Normal
1.5
217
Tumor
1.4
471
Tumor
1.1
213
Tumor
1.1
473
Tumor
1.1
191
Tumor
1.0
196
Normal
0.9
685
Tumor
0.9
477
Tumor
0.9
635
Tumor
0.9
627
Tumor
0.9
341
Tumor
0.9
231
Tumor
0.8
696
Normal
0.8
721
Tumor
0.8
615
Tumor
0.8
715
Tumor
0.8
271
Tumor
0.8
642
Normal
0.7
741
Tumor
0.7
424
Normal
0.7
214
Normal
0.7
861
Tumor
0.7
125
Tumor
0.7
187
Tumor
0.7
195
Tumor
0.7
1046
Normal
0.7
722
Normal
0.7
641
Tumor
0.7
618
Normal
0.7
422
Normal
0.7
1016
Normal
0.7
387
Tumor
0.6
444
Normal
0.6
867
Tumor
0.6
698
Normal
0.6
481
Tumor
0.6
311
Tumor
0.6
665
Tumor
0.6
661
Tumor
0.5
863
Tumor
0.5
636
Normal
0.5
353
Tumor
0.5
468
Normal
0.5
218
Normal
0.5
714
Normal
0.5
981
Tumor
0.5
434
Normal
0.5
147
Tumor
0.5
257
Tumor
0.5
222
Normal
0.5
456
Normal
0.5
386
Normal
0.5
455
Tumor
0.5
617
Tumor
0.5
361
Tumor
0.5
465
Tumor
0.5
343
Tumor
0.5
978
Normal
0.5
171
Tumor
0.4
1045
Tumor
0.4
111
Normal
0.4
427
Tumor
0.4
955
Tumor
0.4
375
Tumor
0.4
433
Tumor
0.4
466
Normal
0.4
357
Tumor
0.4
616
Normal
0.4
312
Normal
0.4
474
Normal
0.4
1013
Tumor
0.4
1014
Normal
0.4
537
Tumor
0.4
262
Normal
0.4
953
Tumor
0.4
428
Normal
0.4
686
Normal
0.4
221
Tumor
0.4
823
Tumor
0.4
535
Tumor
0.4
123
Tumor
0.4
628
Normal
0.4
944
Normal
0.4
385
Tumor
0.4
355
Tumor
0.4
957
Tumor
0.3
671
Tumor
0.3
1015
Tumor
0.3
983
Tumor
0.3
695
Tumor
0.3
464
Normal
0.3
1044
Normal
0.3
124
Normal
0.3
391
Tumor
0.3
672
Normal
0.3
212
Normal
0.3
938
Normal
0.3
536
Normal
0.3
127
Tumor
0.3
977
Tumor
0.3
956
Normal
0.3
573
Tumor
0.3
272
Normal
0.3
865
Tumor
0.3
697
Tumor
0.3
943
Tumor
0.3
126
Normal
0.3
396
Normal
0.3
737
Tumor
0.3
553
Tumor
0.3
314
Normal
0.3
913
Tumor
0.3
284
Normal
0.3
432
Normal
0.3
482
Normal
0.3
448
Normal
0.3
462
Normal
0.3
1025
Tumor
0.2
716
Normal
0.2
742
Normal
0.2
666
Normal
0.2
114
Normal
0.2
415
Tumor
0.2
416
Normal
0.2
331
Tumor
0.2
663
Tumor
0.2
723
Tumor
0.2
513
Tumor
0.2
518
Normal
0.2
648
Normal
0.2
332
Normal
0.2
954
Normal
0.2
268
Normal
0.2
258
Normal
0.2
261
Tumor
0.2
484
Normal
0.2
472
Normal
0.2
297
Tumor
0.2
525
Tumor
0.2
211
Tumor
0.2
982
Normal
0.2
874
Normal
0.2
352
Normal
0.2
984
Normal
0.2
267
Tumor
0.2
283
Tumor
0.2
426
Normal
0.2
724
Normal
0.2
461
Tumor
0.2
554
Normal
0.2
515
Tumor
0.2
883
Tumor
0.2
463
Tumor
0.2
394
Normal
0.2
414
Normal
0.2
367
Tumor
0.2
351
Tumor
0.2
538
Normal
0.2
436
Normal
0.2
278
Normal
0.2
868
Normal
0.2
728
Normal
0.2
446
Normal
0.2
478
Normal
0.2
881
Tumor
0.2
862
Normal
0.1
188
Normal
0.1
738
Normal
0.1
363
Tumor
0.1
528
Normal
0.1
662
Normal
0.1
223
Tumor
0.1
1027
Tumor
0.1
224
Normal
0.1
232
Normal
0.1
467
Tumor
0.1
1031
Tumor
0.1
817
Tumor
0.1
365
Tumor
0.1
228
Normal
0.1
647
Tumor
0.1
866
Normal
0.1
1042
Normal
0.1
298
Normal
0.1
286
Normal
0.1
873
Tumor
0.1
744
Normal
0.1
964
Normal
0.1
342
Normal
0.1
328
Normal
0.1
395
Tumor
0.1
526
Normal
0.1
858
Normal
0.1
392
Normal
0.1
952
Normal
0.1
572
Normal
0.1
911
Tumor
0.1
498
Normal
0.1
364
Normal
0.1
514
Normal
0.1
1043
Tumor
0.1
534
Normal
0.1
452
Normal
0.1
546
Normal
0.1
527
Tumor
0.1
852
Normal
0.1
815
Tumor
0.1
851
Tumor
0.0
951
Tumor
0.0
354
Normal
0.0
185
Tumor
0.0
545
Tumor
0.0
344
Normal
0.0
413
Tumor
0.0
412
Normal
0.0
966
Normal
0.0
664
Normal
0.0
447
Tumor
0.0
857
Tumor
0.0
567
Tumor
0.0
327
Tumor
0.0
516
Normal
0.0
563
Tumor
0.0
443
Tumor
0.0
388
Normal
0.0
963
Tumor
0.0
524
Normal
0.0
713
Tumor
0.0
967
Tumor
0.0
411
Tumor
0.0
1026
Normal
0.0
128
Normal
0.0
1028
Normal
0.0
824
Normal
0.0
574
Normal
0.0
277
Tumor
0.0
285
Tumor
0.0
113
Tumor
0.0
368
Normal
0.0
976
Normal
0.0
968
Normal
0.0
148
Normal
0.0
517
Tumor
-0.1
313
Tumor
-0.1
435
Tumor
-0.1
494
Normal
-0.1
864
Normal
-0.1
558
Normal
-0.1
818
Normal
-0.1
425
Tumor
-0.1
727
Tumor
-0.1
912
Normal
-0.1
451
Tumor
-0.1
571
Tumor
-0.1
493
Tumor
-0.1
884
Normal
-0.1
356
Normal
-0.1
488
Normal
-0.1
1032
Normal
-0.1
937
Tumor
-0.1
431
Tumor
-0.1
497
Tumor
-0.1
743
Tumor
-0.1
1021
Tumor
-0.1
877
Tumor
-0.1
492
Normal
-0.1
483
Tumor
-0.1
975
Tumor
-0.1
882
Normal
-0.1
384
Normal
-0.1
358
Normal
-0.2
557
Tumor
-0.2
564
Normal
-0.2
914
Normal
-0.2
112
Tumor
-0.2
445
Tumor
-0.2
523
Tumor
-0.2
362
Normal
-0.2
491
Tumor
-0.2
423
Tumor
-0.2
393
Tumor
-0.2
1022
Normal
-0.2
227
Tumor
-0.2
958
Normal
-0.3
162
Normal
-0.3
816
Normal
-0.3
965
Tumor
-0.3
172
Normal
-0.3
1041
Tumor
-0.3
383
Tumor
-0.3
161
Tumor
-0.3
366
Normal
-0.4
186
Normal
-0.4
487
Tumor
-0.4
878
Normal
-0.4
376
Normal
-0.4
568
Normal
-0.4
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
