Transcription factor landscape - Brain region - Muscle cells

The expression profile of muscle cells or mural cells, pericytes and vascular associated smooth muscle cells, are compared to other cell types in the brain. Both pericytes and vascular associated smooth muscle cells (also called vascular smooth muscle cells (vSMC) share the function of importat vasculature support and circulation.

Transcriptome analysis shows that 71% (n=14355) of all human proteins (n=20162) are detected in mural cells and 890 of these genes show an elevated expression in any mural cells compared to other brain cell types. Learn more about genes with elevated expression in mural cells here. In-depth analysis of transcription factor genes expressed in mural cells highlights 86 transcription factors with elevated expression in mural cells compared to other cell types. In total, 1 transcription factors are classified as enriched in mural cells.

Here we provide the expression overview of all transcription factors that show enriched expression levels in neuronal clusters compared to other brain cluster types.

Enriched transcription factors
Gene Expression
FOSB
Cell type enriched (Vascular associated smooth muscle cell)

Enriched transcription factors
Gene Expression
FOXC1
Group enriched (Endothelial cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
ZFP57
Group enriched (Central nervous system macrophage, Committed oligodendrocyte precursor, Leukocyte, Oligodendrocyte, Oligodendrocyte precursor cell, Pericyte)
PGR
Group enriched (Endothelial cell, Ependymal cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
ALX3
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
ARID5A
Group enriched (Central nervous system macrophage, Endothelial cell, Leukocyte, Pericyte, Vascular associated smooth muscle cell)
ATF3
Group enriched (Endothelial cell, Ependymal cell, Vascular associated smooth muscle cell)
ATOH8
Group enriched (Astrocyte, Bergmann glia, Committed oligodendrocyte precursor, Endothelial cell, Fibroblast, Oligodendrocyte precursor cell, Vascular associated smooth muscle cell)
EBF1
Group enriched (Endothelial cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
EPAS1
Group enriched (Endothelial cell, Pericyte, Vascular associated smooth muscle cell)
ETS1
Group enriched (Endothelial cell, Leukocyte, Pericyte, Vascular associated smooth muscle cell)
ETV7
Group enriched (Pericyte, Vascular associated smooth muscle cell)
FOS
Group enriched (Astrocyte, Central nervous system macrophage, Endothelial cell, Ependymal cell, Vascular associated smooth muscle cell)
FOSL2
Group enriched (Endothelial cell, Leukocyte, Vascular associated smooth muscle cell)
FOXC2
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
FOXD1
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
FOXD2
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
FOXF2
Group enriched (Endothelial cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
FOXL1
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
HES1
Group enriched (Astrocyte, Bergmann glia, Endothelial cell, Ependymal cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
HES4
Group enriched (Pericyte, Vascular associated smooth muscle cell)
HEYL
Group enriched (Pericyte, Vascular associated smooth muscle cell)
HIC1
Group enriched (Fibroblast, Pericyte)
MEOX2
Group enriched (Astrocyte, Fibroblast, Vascular associated smooth muscle cell)
NFATC4
Group enriched (Astrocyte, Bergmann glia, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
NKX6-1
Group enriched (Ependymal cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
NR1H4
Group enriched (Ependymal cell, Vascular associated smooth muscle cell)
NR2F2
Group enriched (Fibroblast, Midbrain-derived inhibitory, Pericyte, Vascular associated smooth muscle cell)
PRRX1
Group enriched (Astrocyte, Bergmann glia, Committed oligodendrocyte precursor, Fibroblast, Oligodendrocyte precursor cell, Pericyte)
PRRX2
Group enriched (Fibroblast, Oligodendrocyte precursor cell, Vascular associated smooth muscle cell)
SIX1
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
SIX5
Group enriched (Astrocyte, Bergmann glia, Choroid plexus epithelial cell, Endothelial cell, Ependymal cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
TBX15
Group enriched (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
TBX2
Group enriched (Pericyte, Vascular associated smooth muscle cell)
TBX3
Group enriched (Endothelial cell, Pericyte, Vascular associated smooth muscle cell)
TCF15
Group enriched (Endothelial cell, Pericyte, Vascular associated smooth muscle cell)
TCF7L1
Group enriched (Astrocyte, Bergmann glia, Choroid plexus epithelial cell, Committed oligodendrocyte precursor, Endothelial cell, Ependymal cell, Fibroblast, Pericyte, Vascular associated smooth muscle cell)
TEAD4
Group enriched (Endothelial cell, Vascular associated smooth muscle cell)
TP63
Group enriched (Ependymal cell, Fibroblast, Pericyte)
ZNF331
Group enriched (Central nervous system macrophage, Leukocyte, Vascular associated smooth muscle cell)

Enriched transcription factors
Gene Expression
MYF6
Cell type enhanced (Pericyte)
ZIC1
Cell type enhanced (Bergmann glia, Fibroblast, Pericyte)
LEF1
Cell type enhanced (Endothelial cell, Pericyte)
ZIC4
Cell type enhanced (Bergmann glia, Fibroblast, Pericyte, Upper rhombic lip)
MEF2B
Cell type enhanced (Vascular associated smooth muscle cell)
YBX3
Cell type enhanced (Endothelial cell, Vascular associated smooth muscle cell)
LBX2
Cell type enhanced (Endothelial cell, Fibroblast, Pericyte)
ALX1
Cell type enhanced (Ependymal cell, Fibroblast, Pericyte)
ALX4
Cell type enhanced (Ependymal cell, Fibroblast, Vascular associated smooth muscle cell)
BATF2
Cell type enhanced (Endothelial cell, Fibroblast, Pericyte)
BHLHE40
Cell type enhanced (Astrocyte, Endothelial cell, Vascular associated smooth muscle cell)
BNC1
Cell type enhanced (Pericyte)
CEBPD
Cell type enhanced (Endothelial cell, Vascular associated smooth muscle cell)
DNMT3L
Cell type enhanced (Vascular associated smooth muscle cell)
EGR1
Cell type enhanced (Vascular associated smooth muscle cell)
EMX2
Cell type enhanced (Astrocyte, Pericyte, Vascular associated smooth muscle cell)
ETV6
Cell type enhanced (Central nervous system macrophage, Vascular associated smooth muscle cell)
FOXQ1
Cell type enhanced (Endothelial cell, Fibroblast, Pericyte)
FOXS1
Cell type enhanced (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
GATA6
Cell type enhanced (Endothelial cell, Fibroblast, Vascular associated smooth muscle cell)
HEY2
Cell type enhanced (Astrocyte, Pericyte, Vascular associated smooth muscle cell)
ID3
Cell type enhanced (Astrocyte, Endothelial cell, Vascular associated smooth muscle cell)
JUN
Cell type enhanced (Astrocyte, Endothelial cell, Vascular associated smooth muscle cell)
JUNB
Cell type enhanced (Endothelial cell, Vascular associated smooth muscle cell)
KLF11
Cell type enhanced (Endothelial cell, Pericyte, Vascular associated smooth muscle cell)
KLF2
Cell type enhanced (Endothelial cell, Leukocyte, Vascular associated smooth muscle cell)
KLF4
Cell type enhanced (Endothelial cell, Fibroblast, Vascular associated smooth muscle cell)
MAFF
Cell type enhanced (Endothelial cell, Vascular associated smooth muscle cell)
MSC
Cell type enhanced (Hippocampal ca4, Pericyte, Vascular associated smooth muscle cell)
NFIL3
Cell type enhanced (Vascular associated smooth muscle cell)
NFKB2
Cell type enhanced (Endothelial cell, Leukocyte, Vascular associated smooth muscle cell)
NR2F1
Cell type enhanced (Fibroblast, Pericyte)
NR4A1
Cell type enhanced (Endothelial cell, Vascular associated smooth muscle cell)
NR4A2
Cell type enhanced (Vascular associated smooth muscle cell)
NR4A3
Cell type enhanced (Ependymal cell, Vascular associated smooth muscle cell)
SNAI2
Cell type enhanced (Pericyte, Vascular associated smooth muscle cell)
SOX13
Cell type enhanced (Endothelial cell, Oligodendrocyte precursor cell, Vascular associated smooth muscle cell)
TBX18
Cell type enhanced (Fibroblast, Pericyte, Vascular associated smooth muscle cell)
TEAD2
Cell type enhanced (Endothelial cell, Pericyte, Vascular associated smooth muscle cell)
TEAD3
Cell type enhanced (Pericyte, Vascular associated smooth muscle cell)
TWIST2
Cell type enhanced (Central nervous system macrophage, Fibroblast, Vascular associated smooth muscle cell)
ZBTB42
Cell type enhanced (Endothelial cell, Ependymal cell, Leukocyte, Vascular associated smooth muscle cell)
ZBTB7C
Cell type enhanced (Ependymal cell, Vascular associated smooth muscle cell)
ZEB1
Cell type enhanced (Pericyte)
ZFHX3
Cell type enhanced (Vascular associated smooth muscle cell)
ZFP92
Cell type enhanced (Midbrain-derived inhibitory, Pericyte)