The human immune cells - data - The Human Protein Atlas

Immune cell data (HPA)Immune cell sample data (HPA)Immune cell sample transcript data (HPA)Immune cell data (Schmiedel)Immune cell data (Monaco)

Immune cell data (HPA)

Transcript expression levels summarized per gene in 18 cell types and total PBMC. The tab-separated file includes Ensembl gene identifier ("Gene"), analysed sample ("Immune cell"), transcripts per million ("TPM"), protein-coding transcripts per million ("pTPM") and normalized expression ("nTPM").

rna_immune_cell.tsv.zip

Immune cells

Download: rna_immune_cell_immune_cells.tsv.zip | 19 lines
Immune cell	Lineage
basophil	granulocytes
classical monocyte	monocytes
eosinophil	granulocytes
gdT-cell	T-cells
intermediate monocyte	monocytes
MAIT T-cell	T-cells
memory B-cell	B-cells
memory CD4 T-cell	T-cells
memory CD8 T-cell	T-cells
myeloid DC	dendritic cells
naive B-cell	B-cells
naive CD4 T-cell	T-cells
naive CD8 T-cell	T-cells
neutrophil	granulocytes
NK-cell	NK-cells
non-classical monocyte	monocytes
plasmacytoid DC	dendritic cells
T-reg	T-cells
total PBMC	total PBMC

Immune cell sample data (HPA)

Transcript expression levels summarized per gene in 109 immune cell samples. "rna_immune_cell_sample.tsv.zip" includes Ensembl gene identifier ("Gene"), analysed sample ("Immune cell"), donor ("Donor"), transcripts per million ("TPM"), protein-coding transcripts per million ("pTPM").

rna_immune_cell_sample.tsv.zip

Samples

Download: rna_immune_cell_samples.tsv.zip | 109 lines
Cell type	HPA sample ID	Sex
basophil	976	Female
basophil	995	Female
basophil	1022	Male
basophil	1040	Female
classical monocyte	941	Male
classical monocyte	958	Male
classical monocyte	977	Female
classical monocyte	996	Female
classical monocyte	1018	Male
classical monocyte	1045	Female
eosinophil	940	Male
eosinophil	959	Male
eosinophil	978	Female
eosinophil	997	Female
eosinophil	1016	Male
eosinophil	1039	Female
gdT-cell	945	Male
gdT-cell	960	Male
gdT-cell	979	Female
gdT-cell	998	Female
gdT-cell	1015	Male
gdT-cell	1036	Female
intermediate monocyte	942	Male
intermediate monocyte	961	Male
intermediate monocyte	980	Female
intermediate monocyte	999	Female
intermediate monocyte	1019	Male
intermediate monocyte	1046	Female
MAIT T-cell	944	Male
MAIT T-cell	962	Male
MAIT T-cell	981	Female
MAIT T-cell	1000	Female
MAIT T-cell	1021	Male
MAIT T-cell	1035	Female
memory B-cell	955	Male
memory B-cell	963	Male
memory B-cell	982	Female
memory B-cell	1001	Female
memory B-cell	1030	Male
memory B-cell	1043	Female
memory CD4 T-cell	952	Male
memory CD4 T-cell	964	Male
memory CD4 T-cell	983	Female
memory CD4 T-cell	1002	Female
memory CD4 T-cell	1024	Male
memory CD4 T-cell	1051	Female
memory CD8 T-cell	950	Male
memory CD8 T-cell	965	Male
memory CD8 T-cell	984	Female
memory CD8 T-cell	1003	Female
memory CD8 T-cell	1049	Female
myeloid DC	948	Male
myeloid DC	966	Male
myeloid DC	985	Female
myeloid DC	1004	Female
myeloid DC	1028	Male
naive B-cell	949	Male
naive B-cell	967	Male
naive B-cell	986	Female
naive B-cell	1005	Female
naive B-cell	1029	Male
naive B-cell	1042	Female
naive CD4 T-cell	953	Male
naive CD4 T-cell	968	Male
naive CD4 T-cell	987	Female
naive CD4 T-cell	1006	Female
naive CD4 T-cell	1023	Male
naive CD4 T-cell	1050	Female
naive CD8 T-cell	954	Male
naive CD8 T-cell	969	Male
naive CD8 T-cell	988	Female
naive CD8 T-cell	1007	Female
naive CD8 T-cell	1025	Male
naive CD8 T-cell	1048	Female
neutrophil	957	Male
neutrophil	970	Male
neutrophil	989	Female
neutrophil	1008	Female
neutrophil	1017	Male
neutrophil	1034	Female
NK-cell	951	Male
NK-cell	971	Male
NK-cell	990	Female
NK-cell	1009	Female
NK-cell	1031	Male
NK-cell	1041	Female
non-classical monocyte	943	Male
non-classical monocyte	991	Female
non-classical monocyte	1010	Female
non-classical monocyte	1020	Male
non-classical monocyte	1047	Female
plasmacytoid DC	947	Male
plasmacytoid DC	973	Male
plasmacytoid DC	992	Female
plasmacytoid DC	1011	Female
plasmacytoid DC	1027	Male
plasmacytoid DC	1037	Female
T-reg	956	Male
T-reg	975	Male
T-reg	994	Female
T-reg	1013	Female
T-reg	1032	Male
T-reg	1044	Female
total PBMC	946	Male
total PBMC	974	Male
total PBMC	993	Female
total PBMC	1012	Female
total PBMC	1014	Male
total PBMC	1033	Female

Immune cell sample transcript data (HPA)

Transcript expression levels in 109 immune cell samples. The tab-separated file includes Ensembl gene identifier, Ensembl transcript identifier, transcript per million ("TPM") and estimated counts of the analysed sample.

transcript_rna_immunecells.tsv.zip

Samples

Download: rna_immune_cell_samples.tsv.zip | 109 lines
Cell type	HPA sample ID	Sex
basophil	976	Female
basophil	995	Female
basophil	1022	Male
basophil	1040	Female
classical monocyte	941	Male
classical monocyte	958	Male
classical monocyte	977	Female
classical monocyte	996	Female
classical monocyte	1018	Male
classical monocyte	1045	Female
eosinophil	940	Male
eosinophil	959	Male
eosinophil	978	Female
eosinophil	997	Female
eosinophil	1016	Male
eosinophil	1039	Female
gdT-cell	945	Male
gdT-cell	960	Male
gdT-cell	979	Female
gdT-cell	998	Female
gdT-cell	1015	Male
gdT-cell	1036	Female
intermediate monocyte	942	Male
intermediate monocyte	961	Male
intermediate monocyte	980	Female
intermediate monocyte	999	Female
intermediate monocyte	1019	Male
intermediate monocyte	1046	Female
MAIT T-cell	944	Male
MAIT T-cell	962	Male
MAIT T-cell	981	Female
MAIT T-cell	1000	Female
MAIT T-cell	1021	Male
MAIT T-cell	1035	Female
memory B-cell	955	Male
memory B-cell	963	Male
memory B-cell	982	Female
memory B-cell	1001	Female
memory B-cell	1030	Male
memory B-cell	1043	Female
memory CD4 T-cell	952	Male
memory CD4 T-cell	964	Male
memory CD4 T-cell	983	Female
memory CD4 T-cell	1002	Female
memory CD4 T-cell	1024	Male
memory CD4 T-cell	1051	Female
memory CD8 T-cell	950	Male
memory CD8 T-cell	965	Male
memory CD8 T-cell	984	Female
memory CD8 T-cell	1003	Female
memory CD8 T-cell	1049	Female
myeloid DC	948	Male
myeloid DC	966	Male
myeloid DC	985	Female
myeloid DC	1004	Female
myeloid DC	1028	Male
naive B-cell	949	Male
naive B-cell	967	Male
naive B-cell	986	Female
naive B-cell	1005	Female
naive B-cell	1029	Male
naive B-cell	1042	Female
naive CD4 T-cell	953	Male
naive CD4 T-cell	968	Male
naive CD4 T-cell	987	Female
naive CD4 T-cell	1006	Female
naive CD4 T-cell	1023	Male
naive CD4 T-cell	1050	Female
naive CD8 T-cell	954	Male
naive CD8 T-cell	969	Male
naive CD8 T-cell	988	Female
naive CD8 T-cell	1007	Female
naive CD8 T-cell	1025	Male
naive CD8 T-cell	1048	Female
neutrophil	957	Male
neutrophil	970	Male
neutrophil	989	Female
neutrophil	1008	Female
neutrophil	1017	Male
neutrophil	1034	Female
NK-cell	951	Male
NK-cell	971	Male
NK-cell	990	Female
NK-cell	1009	Female
NK-cell	1031	Male
NK-cell	1041	Female
non-classical monocyte	943	Male
non-classical monocyte	991	Female
non-classical monocyte	1010	Female
non-classical monocyte	1020	Male
non-classical monocyte	1047	Female
plasmacytoid DC	947	Male
plasmacytoid DC	973	Male
plasmacytoid DC	992	Female
plasmacytoid DC	1011	Female
plasmacytoid DC	1027	Male
plasmacytoid DC	1037	Female
T-reg	956	Male
T-reg	975	Male
T-reg	994	Female
T-reg	1013	Female
T-reg	1032	Male
T-reg	1044	Female
total PBMC	946	Male
total PBMC	974	Male
total PBMC	993	Female
total PBMC	1012	Female
total PBMC	1014	Male
total PBMC	1033	Female

Immune cell data (Schmiedel)

Transcript expression levels summarized per gene in 15 immune cell types. The tab-separated file includes Ensembl gene identifier ("Gene"), analysed sample ("Immune cell") and transcripts per million ("TPM"). The data was obtained from Schmiedel publication and is based on The Human Protein Atlas version 24.0 and Ensembl version 109.

rna_immune_cell_schmiedel.tsv.zip

Immune cells

Download: rna_immune_cell_schmiedel_immune_cells.tsv.zip | 15 lines
Immune cell	Lineage
classical monocyte	monocytes
Memory CD4 T-cell TFH	T-cells
Memory CD4 T-cell Th1	T-cells
Memory CD4 T-cell Th1/Th17	T-cells
Memory CD4 T-cell Th17	T-cells
Memory CD4 T-cell Th2	T-cells
Memory T-reg	T-cells
naive B-cell	B-cells
naive CD4 T-cell	T-cells
Naive CD4 T-cell activated	T-cells
naive CD8 T-cell	T-cells
Naive CD8 T-cell activated	T-cells
Naive T-reg	T-cells
NK-cell	NK-cells
non-classical monocyte	monocytes

Immune cell data (Monaco)

Transcript expression levels summarized per gene in 30 immune cell types. The tab-separated file includes Ensembl gene identifier ("Gene"), analysed sample ("Immune cell"), transcripts per million ("TPM") and protein-coding transcripts per million ("pTPM"). The data was obtained from Monaco publication and is based on The Human Protein Atlas version 24.0 and Ensembl version 109.

rna_immune_cell_monaco.tsv.zip

Immune cells

Download: rna_immune_cell_monaco_immune_cells.tsv.zip | 30 lines
Immune cell	Lineage
basophil	granulocytes
Central memory CD8 T-cell	T-cells
classical monocyte	monocytes
Effector memory CD8 T-cell	T-cells
Exhausted memory B-cell	B-cells
intermediate monocyte	monocytes
MAIT T-cell	T-cells
Memory CD4 T-cell TFH	T-cells
Memory CD4 T-cell Th1	T-cells
Memory CD4 T-cell Th1/Th17	T-cells
Memory CD4 T-cell Th17	T-cells
Memory CD4 T-cell Th2	T-cells
myeloid DC	dendritic cells
naive B-cell	B-cells
naive CD4 T-cell	T-cells
naive CD8 T-cell	T-cells
neutrophil	granulocytes
NK-cell	NK-cells
non-classical monocyte	monocytes
Non-switched memory B-cell	B-cells
Non-Vd2 gdTCR	T-cells
Plasmablast	B-cells
plasmacytoid DC	dendritic cells
Progenitor cell	Progenitors
Switched memory B-cell	B-cells
T-reg	T-cells
Terminal effector memory CD4 T-cell	T-cells
Terminal effector memory CD8 T-cell	T-cells
total PBMC	total PBMC
Vd2 gdTCR	T-cells