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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Cells in granular layer:
Not detected
Cells in molecular layer:
Medium
Purkinje cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
11.3
nTPM
FANTOM5:
58.0
Scaled Tags Per Million
Mouse:
21.1
nTPM
CEREBELLUM - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA053653
Purkinje cells
Low
Cells in granular layer
Not detected
Cells in molecular layer
Medium
CEREBELLUM - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.3
Sample id
Sample description
nTPM
Cerebellar cortex nTPM: 5.6
2003
Female, age 85, right hemisphere
9.2
1788
Male, age 55, unknown
8.5
1769
Male, age 76, right hemisphere
7.6
1768
Female, age 72, unknown
5.2
2006
Male, age 61, right hemisphere
5.1
2101
Male, age 74, right hemisphere
4.2
2055
Female, age 91, right hemisphere
3.0
1774
Male, age 80, left hemisphere
1.8
Cerebellar nuclei nTPM: 11.3
2005
Male, age 80, left hemisphere
14.7
1966
Female, age 91, left hemisphere
14.6
2882
Male, age 76, left hemisphere
14.3
2175
Male, age 61, right hemisphere
10.9
2177
Female, age 85, both hemispheres
10.7
1879
Male, age 55, unknown
10.4
2783
Female, age 72, unknown
9.7
2318
Male, age 74, left hemisphere
9.5
1871
Male, age 74, unknown
6.9
Flocculonodular lobe nTPM: 5.8
2004
Male, age 61, right hemisphere
8.0
2176
Female, age 91, right hemisphere
7.5
1792
Male, age 74, unknown
7.0
1835
Female, age 85, right hemisphere
6.7
1765
Male, age 55, unknown
5.6
1767
Male, age 76, left hemisphere
5.4
1771
Male, age 80, left hemisphere
0.7
Vermis nTPM: 5.2
1751
Male, age 74, right hemisphere
6.9
2460
Male, age 61, both hemispheres
6.9
1928
Female, age 72, unknown
6.8
1770
Male, age 76, left hemisphere
6.3
1825
Male, age 74, unknown
4.9
2834
Male, age 80, left hemisphere
4.4
1988
Female, age 85, left hemisphere
3.8
1766
Male, age 55, unknown
3.7
1778
Female, age 91, left hemisphere
2.7
CEREBELLUM - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
