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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
13.9
nTPM
FANTOM5:
14.0
Scaled Tags Per Million
Pig:
11.5
nTPM
Mouse:
12.8
nTPM
Allen mouse:
14.3
Expression energy
CAUDATE - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA036316
Antibody HPA036317
Glial cells
Low
Not detected
Neuronal cells
Medium
Not detected
BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.9
Sample id
Sample description
nTPM
Caudate nucleus nTPM: 9.5
2288
Male, age 75, left hemisphere
11.1
2289
Male, age 61, right hemisphere
10.3
2290
Female, age 72, unknown
9.7
2846
Female, age 79, unknown
9.7
1854
Male, age 80, left hemisphere
9.4
2481
Female, age 94, left hemisphere
9.2
1857
Female, age 85, left hemisphere
8.6
1781
Male, age 74, unknown
8.0
Globus pallidus, externus nTPM: 13.0
1996
Male, age 80, right hemisphere
14.6
2567
Female, age 72, unknown
14.3
2646
Male, age 61, right hemisphere
12.7
2772
Female, age 79, unknown
11.9
2395
Male, age 75, both hemispheres
11.5
Globus pallidus, internus nTPM: 13.9
2111
Female, age 85, right hemisphere
16.0
1818
Male, age 74, unknown
15.0
2037
Male, age 80, right hemisphere
14.5
2778
Female, age 91, both hemispheres
14.4
2566
Female, age 72, unknown
14.0
2287
Male, age 75, right hemisphere
13.1
2483
Female, age 94, right hemisphere
10.2
Nucleus accumbens nTPM: 10.2
2732
Male, age 80, right hemisphere
11.3
2286
Male, age 75, left hemisphere
11.2
2698
Female, age 72, unknown
11.1
2391
Female, age 94, left hemisphere
10.9
2824
Male, age 61, right hemisphere
10.9
1806
Female, age 85, left hemisphere
9.9
1783
Male, age 74, unknown
8.4
1856
Female, age 91, right hemisphere
8.0
Nucleus basalis of Meynert nTPM: 10.8
2569
Male, age 61, both hemispheres
12.4
2821
Male, age 75, both hemispheres
11.8
2393
Male, age 80, right hemisphere
10.2
2484
Female, age 94, left hemisphere
8.6
Nucleus of the diagonal band nTPM: 8.3
1979
Male, age 74, unknown
9.4
2029
Male, age 61, right hemisphere
9.0
2195
Female, age 85, both hemispheres
8.0
1812
Female, age 91, both hemispheres
7.8
2775
Male, age 80, right hemisphere
7.4
Putamen nTPM: 9.5
1829
Male, age 74, unknown
11.0
2647
Male, age 75, left hemisphere
10.2
2489
Female, age 72, unknown
9.8
2482
Female, age 94, left hemisphere
9.5
1937
Female, age 91, right hemisphere
9.3
2466
Female, age 79, unknown
8.6
1838
Male, age 80, right hemisphere
8.2
Septal nuclei nTPM: 8.9
2629
Female, age 94, right hemisphere
10.5
2199
Male, age 80, right hemisphere
10.4
2394
Male, age 61, left hemisphere
9.8
2059
Female, age 85, both hemispheres
9.3
2009
Female, age 91, both hemispheres
8.0
1960
Male, age 74, unknown
7.1
2031
Female, age 72, unknown
6.8
Stria terminalis, bed nucleus nTPM: 8.6
2201
Male, age 74, unknown
9.4
1974
Female, age 91, both hemispheres
8.2
2486
Female, age 94, both hemispheres
8.2
BASAL GANGLIA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.8
Mouse sample
Sample description
nTPM
Caudate putamen nTPM: 7.3
Samples: 4
Max nTPM: 7.9
Min nTPM: 6.8
Sample A
Male
7.3
Sample B
Male
7.3
Sample C
Female
7.9
Sample D
Female
6.8
Septum nTPM: 12.8
Samples: 4
Max nTPM: 15.5
Min nTPM: 9.8
Sample A
Male
11.8
Sample B
Male
15.5
Sample C
Female
13.9
Sample D
Female
9.8
Ventral forebrain nTPM: 9.5
Samples: 4
Max nTPM: 12.7
Min nTPM: 6.7
Sample A
Male
9.3
Sample B
Male
9.3
Sample C
Female
6.7
Sample D
Female
12.7
BASAL GANGLIA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
