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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
40.4
nTPM
FANTOM5:
0.0
Scaled Tags Per Million
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 34.9
2586
Male, age 75, left hemisphere
44.4
2828
Female, age 72, unknown
39.0
1870
Female, age 42, unknown
36.1
1833
Male, age 53, unknown
36.0
1827
Male, age 72, unknown
34.8
1830
Male, age 51, unknown
33.7
2666
Male, age 74, left hemisphere
33.5
2411
Female, age 72, unknown
32.3
2019
Male, age 18, unknown
31.5
2219
Male, age 76, both hemispheres
28.3
Dorsal raphe nucleus nTPM: 34.8
2750
Male, age 76, both hemispheres
38.8
2047
Male, age 72, unknown
38.4
2298
Female, age 72, unknown
33.3
1828
Male, age 53, unknown
32.2
2016
Female, age 72, unknown
31.0
Inferior colliculus nTPM: 35.8
2849
Male, age 72, unknown
38.1
2097
Female, age 72, unknown
37.5
1890
Male, age 53, unknown
34.8
1848
Female, age 42, unknown
32.7
Median raphe nucleus nTPM: 37.3
2220
Male, age 76, midline
37.3
Periaquaductal grey, anterior nTPM: 40.4
2502
Female, age 75, unknown
43.8
1795
Male, age 51, unknown
38.9
1947
Male, age 18, unknown
38.6
Periaquaductal grey, dorsal nTPM: 31.0
1840
Male, age 53, unknown
35.8
2850
Male, age 76, both hemispheres
30.4
1831
Male, age 72, unknown
29.7
2464
Female, age 72, unknown
28.1
Periaquaductal grey, lateral nTPM: 36.7
2272
Male, age 74, both hemispheres
45.7
2053
Male, age 18, unknown
32.8
2140
Male, age 76, both hemispheres
31.6
Pretectal area nTPM: 38.1
2007
Male, age 72, unknown
48.5
1944
Female, age 72, unknown
45.6
1816
Male, age 51, unknown
44.9
1817
Female, age 42, unknown
40.5
2667
Female, age 75, unknown
36.6
2825
Male, age 18, unknown
35.4
1815
Male, age 53, unknown
35.1
2224
Female, age 72, unknown
35.1
2273
Male, age 74, both hemispheres
34.5
2407
Male, age 75, both hemispheres
34.4
2316
Male, age 76, right hemisphere
28.2
Red nucleus nTPM: 32.6
2785
Male, age 18, unknown
40.5
2584
Male, age 75, left hemisphere
39.1
2588
Male, age 74, left hemisphere
36.1
2503
Female, age 72, unknown
33.6
2769
Male, age 72, unknown
32.4
2227
Male, age 72, unknown
31.4
1954
Female, age 42, unknown
31.2
2725
Female, age 75, unknown
30.4
1865
Male, age 51, unknown
29.9
1904
Male, age 53, unknown
29.1
1821
Female, age 72, unknown
29.0
2823
Male, age 76, right hemisphere
28.7
Substantia nigra nTPM: 34.2
1889
Female, age 72, unknown
42.9
1916
Female, age 42, unknown
42.2
1941
Male, age 53, unknown
38.0
2583
Male, age 75, right hemisphere
36.4
2590
Female, age 75, unknown
34.9
2665
Male, age 74, both hemispheres
33.6
2699
Male, age 18, unknown
32.6
1851
Male, age 51, unknown
32.3
2241
Male, age 72, unknown
28.3
2409
Female, age 72, unknown
20.9
Superior colliculus nTPM: 33.5
2261
Male, age 18, unknown
37.4
2587
Male, age 74, left hemisphere
36.3
2664
Male, age 75, both hemispheres
36.1
1796
Male, age 53, unknown
35.7
1839
Male, age 51, unknown
34.3
2668
Female, age 75, unknown
32.5
1895
Male, age 76, right hemisphere
32.4
2087
Female, age 72, unknown
32.2
1913
Female, age 42, unknown
30.7
1995
Male, age 72, unknown
27.8
Ventral tegmental area nTPM: 34.8
2218
Male, age 76, both hemispheres
38.3
2410
Female, age 72, unknown
36.8
1915
Female, age 42, unknown
35.2
1942
Male, age 51, unknown
34.0
2223
Female, age 72, unknown
32.8
2021
Male, age 53, unknown
31.4
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
