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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Cells in granular layer:
Medium
Cells in molecular layer:
High
Purkinje cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
219.0
nTPM
FANTOM5:
126.6
Scaled Tags Per Million
Pig:
97.5
nTPM
Mouse:
29.7
nTPM
Allen mouse:
3.8
Expression energy
CEREBELLUM - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA021022
Purkinje cells
High
Cells in granular layer
Medium
Cells in molecular layer
High
CEREBELLUM - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
219.0
Sample id
Sample description
nTPM
Cerebellar cortex nTPM: 193.7
1769
Male, age 76, right hemisphere
267.1
1774
Male, age 80, left hemisphere
228.1
1768
Female, age 72, unknown
216.8
1788
Male, age 55, unknown
200.4
2055
Female, age 91, right hemisphere
186.5
2003
Female, age 85, right hemisphere
161.3
2101
Male, age 74, right hemisphere
159.3
2006
Male, age 61, right hemisphere
129.9
Cerebellar nuclei nTPM: 140.1
2882
Male, age 76, left hemisphere
177.5
2005
Male, age 80, left hemisphere
149.8
2177
Female, age 85, both hemispheres
139.3
2783
Female, age 72, unknown
138.5
1879
Male, age 55, unknown
136.7
1966
Female, age 91, left hemisphere
132.7
2318
Male, age 74, left hemisphere
129.6
1871
Male, age 74, unknown
129.1
2175
Male, age 61, right hemisphere
127.4
Flocculonodular lobe nTPM: 219.0
1767
Male, age 76, left hemisphere
272.0
1771
Male, age 80, left hemisphere
250.4
1765
Male, age 55, unknown
231.1
1792
Male, age 74, unknown
207.3
1835
Female, age 85, right hemisphere
197.9
2176
Female, age 91, right hemisphere
189.4
2004
Male, age 61, right hemisphere
184.9
Vermis nTPM: 200.5
1770
Male, age 76, left hemisphere
247.7
1778
Female, age 91, left hemisphere
215.8
1825
Male, age 74, unknown
206.6
1751
Male, age 74, right hemisphere
204.8
1988
Female, age 85, left hemisphere
197.5
1766
Male, age 55, unknown
194.7
2460
Male, age 61, both hemispheres
183.0
2834
Male, age 80, left hemisphere
179.3
1928
Female, age 72, unknown
175.1
CEREBELLUM - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.7
Mouse sample
Sample description
nTPM
Cerebellum nTPM: 29.8
Samples: 4
Max nTPM: 33.3
Min nTPM: 27.0
Sample A
Male
33.3
Sample B
Male
27.0
Sample C
Female
29.6
Sample D
Female
29.1
CEREBELLUM - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
