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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HERC3 is not prognostic in Kidney Chromophobe (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.0
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
13.9
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
3.1
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
3.1
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
2.7
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
2.4
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
2.2
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
2.1
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
2.0
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
1.9
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
1.9
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
1.8
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
1.7
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
1.7
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
1.7
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
1.6
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
1.6
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
1.4
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
1.4
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
1.2
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
1.2
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
1.2
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
1.2
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
1.2
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
1.1
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
1.0
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
1.0
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
0.9
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
0.8
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
0.7
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
0.7
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
0.7
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
0.6
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
0.6
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
0.6
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
0.6
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
0.6
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
0.5
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
0.4
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
0.3
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
0.2
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
0.2
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
0.2
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
0.1
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
0.0
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
0.0
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
0.0
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
0.0
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
0.0
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
0.0
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
0.0
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
0.0
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
0.0
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
0.0
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
0.0
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
0.0
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
0.0
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
0.0
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
0.0
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
0.0
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
0.0
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
0.0
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
0.0
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
0.0
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.9
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
3.2
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
3.0
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
3.0
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
2.9
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
2.9
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
2.9
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
2.6
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
2.5
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
2.5
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
2.5
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
2.5
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
2.4
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
2.4
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
2.4
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
2.4
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
2.3
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
2.3
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
2.3
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
2.3
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
2.2
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
2.2
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
2.2
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
2.2
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
2.1
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
2.1
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
2.1
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
2.1
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
2.1
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
2.1
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
2.1
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
2.0
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
2.0
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
2.0
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
2.0
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
2.0
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
2.0
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
1.9
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
1.9
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
1.9
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
1.9
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
1.9
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
1.9
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
1.9
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
1.9
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
1.9
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
1.8
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
1.8
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
1.8
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
1.8
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
1.8
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
1.8
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
1.8
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
1.8
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
1.8
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
1.8
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
1.8
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
1.8
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
1.7
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
1.7
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
1.7
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
1.7
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
1.7
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
1.7
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
1.7
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
1.7
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
1.7
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
1.6
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
1.6
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
1.6
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
1.6
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
1.6
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
1.6
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
1.6
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
1.6
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
1.6
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
1.6
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
1.6
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
1.6
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
1.6
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
1.6
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
1.6
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
1.5
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
1.5
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
1.5
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
1.5
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
1.5
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
1.5
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
1.5
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
1.5
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
1.5
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
1.5
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
1.4
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
1.4
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
1.4
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
1.4
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
1.4
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
1.4
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
1.4
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
1.4
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
1.4
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
1.4
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
1.4
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
1.4
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
1.4
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
1.4
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
1.4
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
1.4
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
1.4
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
1.3
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
1.3
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
1.3
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
1.3
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
1.3
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
1.3
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
1.3
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
1.3
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
1.3
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
1.3
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
1.3
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
1.3
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
1.3
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
1.3
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
1.3
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
1.3
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
1.3
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
1.3
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
1.3
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
1.3
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
1.2
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
1.2
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
1.2
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
1.2
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
1.2
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
1.2
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
1.2
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
1.2
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
1.2
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
1.2
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
1.2
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
1.2
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
1.2
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
1.2
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
1.2
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
1.2
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
1.2
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
1.2
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
1.2
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
1.2
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
1.2
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
1.2
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
1.2
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
1.2
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
1.2
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
1.2
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
1.2
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
1.2
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
1.2
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
1.2
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
1.2
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
1.2
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
1.1
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
1.1
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
1.1
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
1.1
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
1.1
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
1.1
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
1.1
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
1.1
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
1.1
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
1.1
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
1.1
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
1.1
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
1.1
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
1.1
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
1.1
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
1.1
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
1.1
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
1.1
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
1.1
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
1.1
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
1.1
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
1.1
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
1.1
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
1.1
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
1.1
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
1.1
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
1.1
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
1.1
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
1.1
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
1.1
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
1.1
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
1.1
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
1.0
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
1.0
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
1.0
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
1.0
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
1.0
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
1.0
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
1.0
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
1.0
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
1.0
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
1.0
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
1.0
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
1.0
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
1.0
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
1.0
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
1.0
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
1.0
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
1.0
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
1.0
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
1.0
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
1.0
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
1.0
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
1.0
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
1.0
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
1.0
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
1.0
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
1.0
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
1.0
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
1.0
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
1.0
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
1.0
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
1.0
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
1.0
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
0.9
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
0.9
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
0.9
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
0.9
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
0.9
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
0.9
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
0.9
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
0.9
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
0.9
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
0.9
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
0.9
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
0.9
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
0.9
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
0.9
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
0.9
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
0.9
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
0.9
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
0.9
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
0.9
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
0.9
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
0.9
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
0.9
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
0.9
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
0.9
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
0.9
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
0.9
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
0.9
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
0.9
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
0.9
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
0.9
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
0.9
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
0.9
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
0.9
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
0.9
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
0.9
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
0.8
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
0.8
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
0.8
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
0.8
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
0.8
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
0.8
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
0.8
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
0.8
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
0.8
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
0.8
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
0.8
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
0.8
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
0.8
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
0.8
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
0.8
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
0.8
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
0.8
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
0.8
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
0.8
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
0.8
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
0.8
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
0.8
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
0.8
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
0.8
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
0.8
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
0.8
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
0.8
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
0.8
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
0.8
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
0.8
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
0.8
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
0.8
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
0.8
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
0.8
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
0.8
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
0.7
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
0.7
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
0.7
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
0.7
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
0.7
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
0.7
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
0.7
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
0.7
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
0.7
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
0.7
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
0.7
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
0.7
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
0.7
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
0.7
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
0.7
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
0.7
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
0.7
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
0.7
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
0.7
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
0.7
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
0.7
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
0.7
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
0.7
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
0.7
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
0.7
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
0.7
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
0.7
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
0.7
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
0.7
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
0.7
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
0.6
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
0.6
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
0.6
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
0.6
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
0.6
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
0.6
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
0.6
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
0.6
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
0.6
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
0.6
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
0.6
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
0.6
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
0.6
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
0.6
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
0.6
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
0.6
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
0.6
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
0.6
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
0.6
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
0.6
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
0.6
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
0.6
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
0.6
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
0.6
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
0.6
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
0.6
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
0.6
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
0.6
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
0.6
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
0.6
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
0.6
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
0.6
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
0.6
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
0.6
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
0.6
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
0.6
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
0.6
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
0.6
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
0.6
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
0.6
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
0.5
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
0.5
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
0.5
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
0.5
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
0.5
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
0.5
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
0.5
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
0.5
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
0.5
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
0.5
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
0.5
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
0.5
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
0.5
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
0.5
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
0.5
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
0.5
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
0.5
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
0.5
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
0.5
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
0.5
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
0.5
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
0.5
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
0.5
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
0.5
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
0.5
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
0.5
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
0.5
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
0.5
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
0.5
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
0.5
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
0.5
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
0.5
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
0.5
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
0.5
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
0.5
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
0.5
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
0.5
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
0.5
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
0.4
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
0.4
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
0.4
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
0.4
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
0.4
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
0.4
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
0.4
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
0.4
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
0.4
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
0.4
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
0.4
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
0.4
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
0.4
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
0.4
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
0.4
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
0.4
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
0.4
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
0.4
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
0.4
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
0.4
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
0.4
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
0.4
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
0.4
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
0.4
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
0.4
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
0.4
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
0.4
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
0.4
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
0.4
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
0.4
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
0.4
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
0.4
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
0.4
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
0.4
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
0.4
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
0.4
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
0.4
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
0.4
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
0.4
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
0.4
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
0.4
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
0.3
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
0.3
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
0.3
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
0.3
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
0.3
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
0.3
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
0.3
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
0.3
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
0.3
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
0.3
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
0.3
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
0.3
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
0.3
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
0.3
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
0.3
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
0.3
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
0.3
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
0.3
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
0.3
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
0.3
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
0.3
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
0.3
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
0.3
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
0.3
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
0.3
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
0.3
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
0.3
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
0.2
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
0.2
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
0.2
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
0.2
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
0.2
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
0.2
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
0.2
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
0.2
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
0.2
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
0.2
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
0.2
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
0.2
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
0.2
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
0.2
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
0.2
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
0.2
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
0.2
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
0.2
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
0.2
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
0.1
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
0.1
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
0.1
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
0.1
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
0.1
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
0.1
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
0.1
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
0.1
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
0.1
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
0.1
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
0.1
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
0.1
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
0.1
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
0.1
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
0.1
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
0.1
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
0.1
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
0.1
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
0.1
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
0.1
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
0.1
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
0.1
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
0.1
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
0.1
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
0.0
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
0.0
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
0.0
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
0.0
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
0.0
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
0.0
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
0.0
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HERC3 is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.8
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
4.4
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
4.1
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
4.1
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
3.7
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
3.3
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
3.3
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
3.2
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
3.1
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
3.1
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
3.1
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
3.1
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
3.0
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
3.0
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
3.0
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
2.9
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
2.9
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
2.8
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
2.8
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
2.8
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
2.8
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
2.8
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
2.8
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
2.7
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
2.7
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
2.5
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
2.5
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
2.5
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
2.4
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
2.3
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
2.3
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
2.3
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
2.2
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
2.2
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
2.2
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
2.2
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
2.2
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
2.2
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
2.1
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
2.1
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
2.0
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
2.0
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
2.0
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
2.0
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
2.0
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
1.9
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
1.9
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
1.9
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
1.9
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
1.9
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
1.9
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
1.8
ccRCC-75
0 years, male, NA, stage:pT3aN1M1, dead, 180 days
1.8
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
1.8
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
1.8
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
1.7
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
1.7
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
1.7
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
1.7
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
1.6
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
1.5
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
1.5
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
1.5
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
1.5
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
1.5
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
1.5
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
1.5
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
1.4
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
1.4
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
1.4
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
1.3
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
1.3
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
1.3
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
1.3
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
1.2
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
1.1
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
1.1
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
1.0
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
1.0
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
1.0
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
1.0
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
1.0
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
1.0
ccRCC-41
0 years, male, NA, stage:pT3bN0M0, dead, 540 days
0.9
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
0.9
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
0.9
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
0.8
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
0.8
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
0.8
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
0.7
ccRCC-10
0 years, male, NA, stage:pT3aN2M1, dead, 90 days
0.7
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
0.7
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
0.6
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
0.6
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
0.6
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
0.6
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
0.4
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
0.4
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
0.4
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
282
Samples
Sample
Description
TPM
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
8.2
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
6.0
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
2.1
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
1.9
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
1.8
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
1.8
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
1.8
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
1.8
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
1.7
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
1.7
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
1.7
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
1.6
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
1.6
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
1.6
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
1.5
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
1.5
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
1.5
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
1.5
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
1.5
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
1.4
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
1.4
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
1.4
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
1.4
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
1.4
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
1.4
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
1.3
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
1.3
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
1.3
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
1.3
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
1.3
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
1.2
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
1.2
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
1.2
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
1.2
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
1.2
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
1.2
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
1.2
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
1.2
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
1.2
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
1.2
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
1.2
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
1.2
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
1.2
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
1.1
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
1.1
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
1.1
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
1.1
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
1.1
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
1.1
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
1.1
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
1.1
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
1.1
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
1.1
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
1.0
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
1.0
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
1.0
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
1.0
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
1.0
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
1.0
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
1.0
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
1.0
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
1.0
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
1.0
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.0
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
1.0
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
1.0
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
1.0
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
1.0
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
0.9
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
0.9
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
0.9
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
0.9
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
0.9
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
0.9
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
0.9
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
0.9
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
0.9
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
0.9
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
0.9
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
0.8
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
0.8
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
0.8
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
0.8
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
0.8
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
0.8
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
0.8
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
0.8
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
0.8
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
0.7
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
0.7
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
0.7
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
0.7
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
0.7
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
0.7
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
0.7
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
0.7
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
0.7
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
0.7
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
0.7
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
0.7
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
0.7
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
0.7
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
0.7
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
0.7
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
0.7
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
0.6
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
0.6
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
0.6
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
0.6
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
0.6
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
0.6
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
0.6
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
0.6
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
0.6
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
0.6
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
0.6
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
0.6
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
0.6
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
0.5
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
0.5
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
0.5
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
0.5
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
0.5
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
0.5
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
0.5
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
0.5
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
0.5
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
0.5
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
0.5
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
0.5
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
0.5
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
0.5
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
0.5
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
0.4
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
0.4
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
0.4
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
0.4
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
0.4
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
0.4
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
0.4
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
0.4
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
0.4
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
0.4
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
0.4
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
0.4
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
0.4
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
0.4
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
0.3
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
0.3
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
0.3
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
0.3
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
0.3
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
0.3
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
0.3
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
0.3
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
0.3
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
0.3
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
0.3
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
0.3
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
0.3
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
0.3
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
0.3
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
0.3
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
0.3
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
0.3
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
0.2
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
0.2
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
0.2
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
0.2
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
0.2
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
0.2
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
0.2
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
0.2
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
0.2
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
0.2
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
0.2
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
0.2
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
0.2
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
0.2
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
0.2
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
0.2
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
0.2
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
0.1
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
0.1
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
0.1
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
0.1
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
0.1
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
0.1
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
0.1
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
0.1
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
0.1
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
0.1
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
0.1
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
0.1
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
0.1
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
0.1
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
0.1
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
0.0
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
0.0
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
0.0
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
0.0
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
0.0
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
0.0
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
0.0
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
0.0
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
0.0
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
0.0
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
0.0
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
0.0
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
0.0
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
0.0
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
0.0
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
0.0
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
0.0
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
0.0
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
0.0
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
0.0
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
0.0
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
0.0
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
0.0
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
0.0
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
0.0
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
0.0
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
0.0
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
0.0
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
0.0
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
0.0
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
0.0
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
0.0
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
0.0
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
0.0
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
0.0
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
0.0
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
0.0
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
0.0
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
0.0
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
0.0
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
0.0
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
0.0
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
0.0
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
0.0
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
0.0
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
0.0
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
0.0
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
0.0
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
0.0
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
0.0
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
0.0
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
0.0
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
0.0
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
0.0
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
0.0
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
0.0
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
0.0
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
0.0
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
0.0
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
0.0
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
0.0
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
0.0
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
0.0
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
0.0
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
0.0
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
0.0
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
0.0
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
0.0
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
0.0
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
0.0
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
0.0
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
0.0
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
0.0
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
0.0
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
0.0
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
0.0
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
0.0
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
0.0
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
0.0
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
0.0
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
0.0
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
0.0
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0066470004
Tumor
1.2
CPT0025290003
Tumor
1.0
CPT0092740003
Normal
1.0
CPT0064370003
Tumor
1.0
CPT0086030003
Tumor
1.0
CPT0020120003
Tumor
0.9
CPT0015910003
Tumor
0.8
CPT0006730001
Normal
0.8
CPT0025170003
Tumor
0.8
CPT0006630003
Tumor
0.8
CPT0081880003
Tumor
0.8
CPT0065750003
Tumor
0.7
CPT0015730003
Tumor
0.7
CPT0014370004
Tumor
0.6
CPT0065690003
Tumor
0.6
CPT0025920001
Normal
0.6
CPT0019990003
Tumor
0.5
CPT0065930003
Tumor
0.5
CPT0063320003
Tumor
0.5
CPT0025880003
Tumor
0.5
CPT0088900003
Tumor
0.5
CPT0075560003
Tumor
0.4
CPT0079380003
Tumor
0.4
CPT0025230003
Tumor
0.4
CPT0088550004
Tumor
0.4
CPT0077490003
Tumor
0.4
CPT0077140001
Normal
0.3
CPT0069000003
Tumor
0.3
CPT0023690003
Tumor
0.3
CPT0086950003
Tumor
0.3
CPT0075720003
Tumor
0.3
CPT0014450004
Tumor
0.3
CPT0088760003
Tumor
0.2
CPT0088710001
Normal
0.2
CPT0014470001
Normal
0.2
CPT0026420001
Normal
0.2
CPT0079300001
Normal
0.2
CPT0019130003
Tumor
0.2
CPT0081990003
Tumor
0.2
CPT0064400001
Normal
0.2
CPT0078830003
Tumor
0.2
CPT0076330003
Tumor
0.2
CPT0015810003
Tumor
0.2
CPT0063640001
Normal
0.2
CPT0089020003
Tumor
0.2
CPT0006440003
Tumor
0.2
CPT0025350003
Tumor
0.2
CPT0086360003
Tumor
0.2
CPT0075570001
Normal
0.1
CPT0010160003
Tumor
0.1
CPT0007870001
Normal
0.1
CPT0088570001
Normal
0.1
CPT0086870003
Tumor
0.1
CPT0065810003
Tumor
0.1
CPT0078510003
Tumor
0.1
CPT0078840001
Normal
0.1
CPT0088920001
Normal
0.1
CPT0088780001
Normal
0.1
CPT0001270001
Normal
0.1
CPT0079230003
Tumor
0.1
CPT0006530001
Normal
0.1
CPT0092160003
Tumor
0.1
CPT0010170001
Normal
0.1
CPT0020020001
Normal
0.1
CPT0076350001
Normal
0.1
CPT0089040001
Normal
0.0
CPT0092790003
Tumor
0.0
CPT0025110003
Tumor
0.0
CPT0077500001
Normal
0.0
CPT0086970003
Normal
0.0
CPT0001260009
Tumor
0.0
CPT0069010001
Normal
0.0
CPT0088500001
Normal
0.0
CPT0077110003
Tumor
0.0
CPT0078530001
Normal
0.0
CPT0023710001
Normal
0.0
CPT0078990003
Tumor
0.0
CPT0082010001
Normal
0.0
CPT0001510001
Normal
0.0
CPT0079000001
Normal
0.0
CPT0063330001
Normal
0.0
CPT0000870016
Tumor
0.0
CPT0085670003
Tumor
0.0
CPT0078800003
Tumor
0.0
CPT0063630003
Tumor
-0.1
CPT0086890003
Normal
-0.1
CPT0078670001
Normal
-0.1
CPT0084590001
Normal
-0.1
CPT0001190001
Normal
-0.1
CPT0002370001
Normal
-0.1
CPT0078660003
Tumor
-0.1
CPT0092190003
Normal
-0.1
CPT0065820001
Normal
-0.1
CPT0007320003
Tumor
-0.1
CPT0000890001
Normal
-0.1
CPT0007470001
Normal
-0.1
CPT0007860003
Tumor
-0.1
CPT0020130001
Normal
-0.1
CPT0075170001
Normal
-0.1
CPT0079510001
Normal
-0.1
CPT0084560003
Tumor
-0.1
CPT0086370003
Normal
-0.1
CPT0092800003
Normal
-0.1
CPT0001500009
Tumor
-0.1
CPT0079270003
Tumor
-0.1
CPT0011410003
Tumor
-0.1
CPT0065870003
Tumor
-0.2
CPT0014350001
Normal
-0.2
CPT0019160001
Normal
-0.2
CPT0086820003
Tumor
-0.2
CPT0075130003
Tumor
-0.2
CPT0092730003
Tumor
-0.2
CPT0066430001
Normal
-0.2
CPT0002350011
Tumor
-0.2
CPT0079480003
Tumor
-0.2
CPT0001180009
Tumor
-0.2
CPT0001350001
Normal
-0.2
CPT0086830003
Normal
-0.2
CPT0088480003
Tumor
-0.3
CPT0026410003
Tumor
-0.3
CPT0088690003
Tumor
-0.3
CPT0088970003
Tumor
-0.5
CPT0001340003
Tumor
-0.5
CPT0069160003
Tumor
-0.6
CPT0069190001
Normal
-1.4
CPT0000790001
Normal
N/A
CPT0078930003
Tumor
N/A
CPT0011240003
Tumor
N/A
CPT0012670003
Tumor
N/A
CPT0012920003
Normal
N/A
CPT0087040003
Tumor
N/A
CPT0024670003
Tumor
N/A
CPT0012640003
Normal
N/A
CPT0021240003
Tumor
N/A
CPT0071150004
Tumor
N/A
CPT0066480003
Tumor
N/A
CPT0025610001
Normal
N/A
CPT0078940001
Normal
N/A
CPT0002270011
Tumor
N/A
CPT0025050003
Tumor
N/A
CPT0012570003
Normal
N/A
CPT0017850003
Tumor
N/A
CPT0012900004
Tumor
N/A
CPT0000780007
Tumor
N/A
CPT0023360001
Normal
N/A
CPT0010110003
Tumor
N/A
CPT0092290003
Tumor
N/A
CPT0088640003
Normal
N/A
CPT0001550001
Normal
N/A
CPT0006950001
Normal
N/A
CPT0079180003
Tumor
N/A
CPT0012080003
Tumor
N/A
CPT0009000003
Tumor
N/A
CPT0024680001
Normal
N/A
CPT0012090003
Normal
N/A
CPT0009020003
Normal
N/A
CPT0077310003
Tumor
N/A
CPT0014160003
Tumor
N/A
CPT0066520001
Normal
N/A
CPT0081600003
Tumor
N/A
CPT0088630003
Tumor
N/A
CPT0012770003
Normal
N/A
CPT0012180003
Tumor
N/A
CPT0017410003
Tumor
N/A
CPT0023350003
Tumor
N/A
CPT0014130001
Normal
N/A
CPT0065450001
Normal
N/A
CPT0006900003
Tumor
N/A
CPT0089480003
Normal
N/A
CPT0012550003
Tumor
N/A
CPT0018250001
Normal
N/A
CPT0017450001
Normal
N/A
CPT0077320001
Normal
N/A
CPT0092310003
Normal
N/A
CPT0065430003
Tumor
N/A
CPT0081620001
Normal
N/A
CPT0089460004
Tumor
N/A
CPT0012370003
Tumor
N/A
CPT0012280003
Tumor
N/A
CPT0009080003
Normal
N/A
CPT0079410003
Tumor
N/A
CPT0001230001
Normal
N/A
CPT0001540009
Tumor
N/A
CPT0010120001
Normal
N/A
CPT0000640003
Tumor
N/A
CPT0013790003
Normal
N/A
CPT0012290003
Normal
N/A
CPT0087050003
Normal
N/A
CPT0009060003
Tumor
N/A
CPT0001220008
Tumor
N/A
CPT0079430001
Normal
N/A
CPT0025580004
Tumor
N/A
CPT0025060001
Normal
N/A
CPT0000660001
Normal
N/A
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
