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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Cells in granular layer:
Medium
Cells in molecular layer:
Not detected
Purkinje cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
12.2
nTPM
FANTOM5:
41.5
Scaled Tags Per Million
Pig:
23.8
nTPM
Mouse:
2.6
nTPM
Allen mouse:
2.0
Expression energy
CEREBELLUM - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA051872
Purkinje cells
Not detected
Cells in granular layer
Medium
Cells in molecular layer
Not detected
CEREBELLUM - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.2
Sample id
Sample description
nTPM
Cerebellar cortex nTPM: 12.2
1788
Male, age 55, unknown
14.9
2055
Female, age 91, right hemisphere
14.2
1774
Male, age 80, left hemisphere
13.0
1768
Female, age 72, unknown
12.2
2006
Male, age 61, right hemisphere
12.2
2003
Female, age 85, right hemisphere
11.6
2101
Male, age 74, right hemisphere
11.3
1769
Male, age 76, right hemisphere
8.2
Cerebellar nuclei nTPM: 11.2
2175
Male, age 61, right hemisphere
12.6
1879
Male, age 55, unknown
12.5
2005
Male, age 80, left hemisphere
12.4
1966
Female, age 91, left hemisphere
11.7
2882
Male, age 76, left hemisphere
11.4
1871
Male, age 74, unknown
11.1
2177
Female, age 85, both hemispheres
10.1
2318
Male, age 74, left hemisphere
9.6
2783
Female, age 72, unknown
8.9
Flocculonodular lobe nTPM: 11.9
1765
Male, age 55, unknown
16.3
1792
Male, age 74, unknown
12.9
2176
Female, age 91, right hemisphere
12.3
1771
Male, age 80, left hemisphere
11.2
2004
Male, age 61, right hemisphere
10.8
1835
Female, age 85, right hemisphere
10.0
1767
Male, age 76, left hemisphere
9.6
Vermis nTPM: 11.8
1988
Female, age 85, left hemisphere
13.6
1766
Male, age 55, unknown
13.3
1825
Male, age 74, unknown
12.1
1928
Female, age 72, unknown
11.9
1778
Female, age 91, left hemisphere
11.7
2460
Male, age 61, both hemispheres
11.4
2834
Male, age 80, left hemisphere
11.2
1751
Male, age 74, right hemisphere
10.9
1770
Male, age 76, left hemisphere
9.9
CEREBELLUM - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.6
Mouse sample
Sample description
nTPM
Cerebellum nTPM: 2.7
Samples: 4
Max nTPM: 6.1
Min nTPM: 0.0
Sample A
Male
0.0
Sample B
Male
4.5
Sample C
Female
6.1
Sample D
Female
0.0
CEREBELLUM - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
