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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TBCE is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.7
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
53.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
45.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
42.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
40.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
39.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
38.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
38.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
37.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
37.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
36.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
33.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
31.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
30.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
30.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
29.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
28.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
28.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
21.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
21.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.4
473
Tumor
1.2
537
Tumor
1.2
951
Tumor
1.2
745
Tumor
1.1
125
Tumor
1.0
221
Tumor
1.0
977
Tumor
1.0
865
Tumor
0.9
685
Tumor
0.9
523
Tumor
0.9
1021
Tumor
0.9
527
Tumor
0.9
271
Tumor
0.9
187
Tumor
0.9
553
Tumor
0.9
131
Tumor
0.9
1043
Tumor
0.9
1027
Tumor
0.9
741
Tumor
0.9
567
Tumor
0.8
975
Tumor
0.8
863
Tumor
0.8
1013
Tumor
0.8
443
Tumor
0.8
277
Tumor
0.8
661
Tumor
0.8
393
Tumor
0.8
573
Tumor
0.7
755
Tumor
0.7
515
Tumor
0.7
171
Tumor
0.7
635
Tumor
0.7
357
Tumor
0.7
231
Tumor
0.7
665
Tumor
0.7
525
Tumor
0.7
351
Tumor
0.7
533
Tumor
0.7
257
Tumor
0.7
471
Tumor
0.6
213
Tumor
0.6
727
Tumor
0.6
777
Tumor
0.6
313
Tumor
0.6
1031
Tumor
0.6
861
Tumor
0.6
724
Normal
0.6
647
Tumor
0.6
463
Tumor
0.6
915
Tumor
0.6
191
Tumor
0.6
411
Tumor
0.6
641
Tumor
0.6
557
Tumor
0.6
477
Tumor
0.5
123
Tumor
0.5
425
Tumor
0.5
921
Tumor
0.5
817
Tumor
0.5
963
Tumor
0.5
375
Tumor
0.5
343
Tumor
0.5
881
Tumor
0.5
663
Tumor
0.5
141
Tumor
0.5
671
Tumor
0.4
737
Tumor
0.4
283
Tumor
0.4
517
Tumor
0.4
697
Tumor
0.4
445
Tumor
0.4
431
Tumor
0.4
883
Tumor
0.4
923
Tumor
0.4
355
Tumor
0.4
361
Tumor
0.4
435
Tumor
0.4
743
Tumor
0.4
925
Tumor
0.4
451
Tumor
0.4
135
Tumor
0.4
877
Tumor
0.3
297
Tumor
0.3
455
Tumor
0.3
957
Tumor
0.3
327
Tumor
0.3
873
Tumor
0.3
823
Tumor
0.3
493
Tumor
0.3
967
Tumor
0.3
491
Tumor
0.3
867
Tumor
0.3
391
Tumor
0.2
285
Tumor
0.2
943
Tumor
0.2
715
Tumor
0.2
571
Tumor
0.2
483
Tumor
0.2
385
Tumor
0.2
227
Tumor
0.2
267
Tumor
0.2
1015
Tumor
0.2
461
Tumor
0.2
487
Tumor
0.2
563
Tumor
0.2
145
Tumor
0.2
513
Tumor
0.2
1041
Tumor
0.2
353
Tumor
0.1
911
Tumor
0.1
1025
Tumor
0.1
813
Tumor
0.1
965
Tumor
0.1
617
Tumor
0.1
913
Tumor
0.1
211
Tumor
0.1
497
Tumor
0.1
421
Tumor
0.0
857
Tumor
0.0
981
Tumor
0.0
112
Tumor
0.0
311
Tumor
0.0
363
Tumor
0.0
815
Tumor
0.0
127
Tumor
0.0
423
Tumor
0.0
721
Tumor
0.0
433
Tumor
0.0
387
Tumor
0.0
185
Tumor
0.0
955
Tumor
0.0
447
Tumor
-0.1
814
Normal
-0.1
195
Tumor
-0.1
953
Tumor
-0.1
113
Tumor
-0.1
395
Tumor
-0.1
137
Tumor
-0.1
331
Tumor
-0.1
851
Tumor
-0.1
1026
Normal
-0.1
416
Normal
-0.1
465
Tumor
-0.1
232
Normal
-0.2
983
Tumor
-0.2
365
Tumor
-0.2
312
Normal
-0.2
278
Normal
-0.2
917
Tumor
-0.2
545
Tumor
-0.2
427
Tumor
-0.2
1045
Tumor
-0.2
298
Normal
-0.2
627
Tumor
-0.2
138
Normal
-0.2
132
Normal
-0.2
136
Normal
-0.2
367
Tumor
-0.2
358
Normal
-0.2
332
Normal
-0.2
937
Tumor
-0.2
354
Normal
-0.2
1042
Normal
-0.3
467
Tumor
-0.3
952
Normal
-0.3
468
Normal
-0.3
314
Normal
-0.3
648
Normal
-0.3
383
Tumor
-0.3
481
Tumor
-0.3
516
Normal
-0.3
272
Normal
-0.3
466
Normal
-0.3
188
Normal
-0.3
1016
Normal
-0.3
268
Normal
-0.3
695
Tumor
-0.3
723
Tumor
-0.3
262
Normal
-0.3
456
Normal
-0.3
474
Normal
-0.3
514
Normal
-0.3
662
Normal
-0.3
341
Tumor
-0.3
218
Normal
-0.3
785
Tumor
-0.3
222
Normal
-0.3
728
Normal
-0.3
223
Tumor
-0.3
738
Normal
-0.3
258
Normal
-0.3
328
Normal
-0.3
186
Normal
-0.3
146
Normal
-0.3
214
Normal
-0.3
162
Normal
-0.3
126
Normal
-0.3
342
Normal
-0.3
944
Normal
-0.3
713
Tumor
-0.3
352
Normal
-0.3
924
Normal
-0.4
918
Normal
-0.4
615
Tumor
-0.4
1022
Normal
-0.4
966
Normal
-0.4
386
Normal
-0.4
217
Tumor
-0.4
124
Normal
-0.4
528
Normal
-0.4
148
Normal
-0.4
192
Normal
-0.4
534
Normal
-0.4
462
Normal
-0.4
434
Normal
-0.4
478
Normal
-0.4
968
Normal
-0.4
1028
Normal
-0.4
864
Normal
-0.4
524
Normal
-0.4
868
Normal
-0.4
362
Normal
-0.4
874
Normal
-0.4
742
Normal
-0.4
172
Normal
-0.4
666
Normal
-0.4
518
Normal
-0.4
564
Normal
-0.4
452
Normal
-0.4
356
Normal
-0.4
956
Normal
-0.4
926
Normal
-0.4
574
Normal
-0.4
413
Tumor
-0.4
484
Normal
-0.4
642
Normal
-0.4
978
Normal
-0.4
444
Normal
-0.4
488
Normal
-0.4
344
Normal
-0.4
415
Tumor
-0.4
376
Normal
-0.4
554
Normal
-0.4
368
Normal
-0.4
196
Normal
-0.4
916
Normal
-0.4
394
Normal
-0.4
976
Normal
-0.4
1046
Normal
-0.4
392
Normal
-0.4
492
Normal
-0.4
786
Normal
-0.4
526
Normal
-0.4
464
Normal
-0.4
161
Tumor
-0.4
664
Normal
-0.4
482
Normal
-0.4
568
Normal
-0.4
498
Normal
-0.4
538
Normal
-0.4
558
Normal
-0.4
436
Normal
-0.4
446
Normal
-0.4
882
Normal
-0.4
472
Normal
-0.5
866
Normal
-0.5
432
Normal
-0.5
862
Normal
-0.5
535
Tumor
-0.5
714
Normal
-0.5
964
Normal
-0.5
428
Normal
-0.5
114
Normal
-0.5
756
Normal
-0.5
142
Normal
-0.5
778
Normal
-0.5
824
Normal
-0.5
816
Normal
-0.5
426
Normal
-0.5
128
Normal
-0.5
366
Normal
-0.5
982
Normal
-0.5
286
Normal
-0.5
884
Normal
-0.5
616
Normal
-0.5
261
Tumor
-0.5
744
Normal
-0.5
228
Normal
-0.5
1044
Normal
-0.5
422
Normal
-0.5
818
Normal
-0.5
698
Normal
-0.5
958
Normal
-0.5
858
Normal
-0.5
1032
Normal
-0.5
388
Normal
-0.5
111
Normal
-0.5
546
Normal
-0.5
912
Normal
-0.5
448
Normal
-0.5
384
Normal
-0.5
878
Normal
-0.5
1014
Normal
-0.5
922
Normal
-0.5
396
Normal
-0.5
364
Normal
-0.5
224
Normal
-0.6
852
Normal
-0.6
536
Normal
-0.6
746
Normal
-0.6
424
Normal
-0.6
572
Normal
-0.6
412
Normal
-0.6
494
Normal
-0.6
628
Normal
-0.6
414
Normal
-0.6
984
Normal
-0.6
672
Normal
-0.6
954
Normal
-0.6
284
Normal
-0.6
636
Normal
-0.6
722
Normal
-0.6
914
Normal
-0.6
618
Normal
-0.6
938
Normal
-0.6
212
Normal
-0.6
686
Normal
-0.7
696
Normal
-0.7
716
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
