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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
106.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
85.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
84.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
73.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
67.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
61.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
59.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
57.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
54.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
53.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
52.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
52.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
51.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
49.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
48.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
46.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
45.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
45.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
45.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
44.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
44.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
44.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
41.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
41.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
40.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
40.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
39.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
39.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
39.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
39.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
38.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
37.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
37.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
36.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
36.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
36.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
36.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
35.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
35.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
35.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
34.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
33.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
33.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
32.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
32.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
32.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
32.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
31.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
31.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
31.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
30.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
30.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
30.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
29.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
29.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
29.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
27.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
27.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
27.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
27.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
26.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
25.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
25.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
25.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
24.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
24.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
24.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
23.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
22.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
21.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
20.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
20.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
20.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
20.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
20.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
19.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
18.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
18.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
14.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.3
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
182.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
155.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
147.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
129.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
119.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
98.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
95.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
89.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
88.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
88.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
83.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
75.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
73.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
72.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
69.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
68.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
68.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
67.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
65.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
65.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
65.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
64.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
63.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
63.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
62.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
60.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
60.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
59.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
59.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
58.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
58.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
57.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
55.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
54.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
53.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
53.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
51.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
51.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
50.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
50.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
49.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
49.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
48.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
48.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
44.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
43.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
42.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
41.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
40.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
39.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
36.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
36.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
36.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
35.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
34.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
33.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
33.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
30.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
29.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
23.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
22.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.4
557
Tumor
0.8
513
Tumor
0.7
311
Tumor
0.7
443
Tumor
0.7
465
Tumor
0.7
452
Normal
0.7
395
Tumor
0.6
857
Tumor
0.6
393
Tumor
0.6
921
Tumor
0.6
777
Tumor
0.5
145
Tumor
0.5
515
Tumor
0.5
1043
Tumor
0.5
955
Tumor
0.5
477
Tumor
0.5
357
Tumor
0.4
361
Tumor
0.4
327
Tumor
0.4
223
Tumor
0.4
966
Normal
0.4
913
Tumor
0.4
343
Tumor
0.4
358
Normal
0.4
451
Tumor
0.4
533
Tumor
0.3
188
Normal
0.3
214
Normal
0.3
628
Normal
0.3
525
Tumor
0.3
571
Tumor
0.3
262
Normal
0.3
187
Tumor
0.3
1015
Tumor
0.3
414
Normal
0.3
423
Tumor
0.3
172
Normal
0.3
392
Normal
0.3
222
Normal
0.3
344
Normal
0.3
434
Normal
0.3
416
Normal
0.3
138
Normal
0.3
376
Normal
0.3
268
Normal
0.3
124
Normal
0.3
394
Normal
0.3
666
Normal
0.3
433
Tumor
0.3
558
Normal
0.3
786
Normal
0.3
383
Tumor
0.3
421
Tumor
0.3
195
Tumor
0.3
978
Normal
0.3
464
Normal
0.3
914
Normal
0.3
368
Normal
0.2
422
Normal
0.2
642
Normal
0.2
721
Tumor
0.2
136
Normal
0.2
564
Normal
0.2
436
Normal
0.2
113
Tumor
0.2
111
Normal
0.2
114
Normal
0.2
286
Normal
0.2
386
Normal
0.2
213
Tumor
0.2
1045
Tumor
0.2
217
Tumor
0.2
466
Normal
0.2
258
Normal
0.2
132
Normal
0.2
514
Normal
0.2
964
Normal
0.2
1046
Normal
0.2
432
Normal
0.2
823
Tumor
0.2
391
Tumor
0.2
446
Normal
0.2
366
Normal
0.2
218
Normal
0.2
428
Normal
0.2
388
Normal
0.2
312
Normal
0.2
278
Normal
0.2
342
Normal
0.2
925
Tumor
0.2
873
Tumor
0.2
1025
Tumor
0.2
563
Tumor
0.2
461
Tumor
0.2
146
Normal
0.2
697
Tumor
0.2
664
Normal
0.2
648
Normal
0.2
662
Normal
0.2
952
Normal
0.2
956
Normal
0.2
1031
Tumor
0.2
778
Normal
0.2
426
Normal
0.2
727
Tumor
0.2
362
Normal
0.2
858
Normal
0.2
724
Normal
0.2
424
Normal
0.1
332
Normal
0.1
816
Normal
0.1
538
Normal
0.1
516
Normal
0.1
713
Tumor
0.1
883
Tumor
0.1
353
Tumor
0.1
341
Tumor
0.1
272
Normal
0.1
162
Normal
0.1
824
Normal
0.1
534
Normal
0.1
636
Normal
0.1
874
Normal
0.1
482
Normal
0.1
137
Tumor
0.1
427
Tumor
0.1
618
Normal
0.1
756
Normal
0.1
746
Normal
0.1
685
Tumor
0.1
866
Normal
0.1
492
Normal
0.1
738
Normal
0.1
396
Normal
0.1
228
Normal
0.1
1028
Normal
0.1
191
Tumor
0.1
478
Normal
0.1
126
Normal
0.1
196
Normal
0.1
926
Normal
0.1
878
Normal
0.1
462
Normal
0.1
314
Normal
0.1
231
Tumor
0.1
572
Normal
0.1
528
Normal
0.1
714
Normal
0.1
916
Normal
0.1
1014
Normal
0.1
1032
Normal
0.1
518
Normal
0.1
742
Normal
0.1
186
Normal
0.1
616
Normal
0.1
444
Normal
0.1
448
Normal
0.1
937
Tumor
0.1
536
Normal
0.1
524
Normal
0.1
1022
Normal
0.1
352
Normal
0.1
615
Tumor
0.1
456
Normal
0.1
185
Tumor
0.1
852
Normal
0.1
728
Normal
0.1
884
Normal
0.0
922
Normal
0.0
141
Tumor
0.0
862
Normal
0.0
328
Normal
0.0
385
Tumor
0.0
365
Tumor
0.0
128
Normal
0.0
851
Tumor
0.0
915
Tumor
0.0
284
Normal
0.0
968
Normal
0.0
868
Normal
0.0
1044
Normal
0.0
982
Normal
0.0
574
Normal
0.0
224
Normal
0.0
818
Normal
0.0
546
Normal
0.0
481
Tumor
0.0
698
Normal
0.0
494
Normal
0.0
554
Normal
0.0
354
Normal
0.0
954
Normal
0.0
526
Normal
0.0
984
Normal
0.0
212
Normal
0.0
944
Normal
0.0
384
Normal
0.0
474
Normal
0.0
661
Tumor
0.0
192
Normal
0.0
686
Normal
0.0
472
Normal
0.0
277
Tumor
0.0
723
Tumor
0.0
142
Normal
0.0
1026
Normal
0.0
356
Normal
0.0
112
Tumor
0.0
977
Tumor
0.0
148
Normal
0.0
864
Normal
0.0
488
Normal
0.0
672
Normal
0.0
1016
Normal
0.0
938
Normal
0.0
882
Normal
0.0
568
Normal
0.0
953
Tumor
0.0
924
Normal
0.0
257
Tumor
0.0
1027
Tumor
0.0
498
Normal
0.0
135
Tumor
0.0
814
Normal
0.0
912
Normal
-0.1
445
Tumor
-0.1
484
Normal
-0.1
298
Normal
-0.1
232
Normal
-0.1
716
Normal
-0.1
171
Tumor
-0.1
696
Normal
-0.1
861
Tumor
-0.1
744
Normal
-0.1
867
Tumor
-0.1
722
Normal
-0.1
665
Tumor
-0.1
535
Tumor
-0.1
918
Normal
-0.1
785
Tumor
-0.1
447
Tumor
-0.1
958
Normal
-0.1
635
Tumor
-0.1
981
Tumor
-0.1
415
Tumor
-0.1
267
Tumor
-0.1
331
Tumor
-0.1
468
Normal
-0.1
412
Normal
-0.2
297
Tumor
-0.2
663
Tumor
-0.2
1041
Tumor
-0.2
815
Tumor
-0.2
463
Tumor
-0.2
755
Tumor
-0.2
364
Normal
-0.2
455
Tumor
-0.2
413
Tumor
-0.2
737
Tumor
-0.2
127
Tumor
-0.2
976
Normal
-0.2
411
Tumor
-0.2
473
Tumor
-0.2
817
Tumor
-0.2
1042
Normal
-0.2
425
Tumor
-0.2
493
Tumor
-0.2
573
Tumor
-0.2
911
Tumor
-0.2
865
Tumor
-0.2
951
Tumor
-0.2
283
Tumor
-0.3
813
Tumor
-0.3
123
Tumor
-0.3
1021
Tumor
-0.3
671
Tumor
-0.3
487
Tumor
-0.3
715
Tumor
-0.3
375
Tumor
-0.3
261
Tumor
-0.3
745
Tumor
-0.3
917
Tumor
-0.3
527
Tumor
-0.3
221
Tumor
-0.3
975
Tumor
-0.3
483
Tumor
-0.3
467
Tumor
-0.3
367
Tumor
-0.3
271
Tumor
-0.3
963
Tumor
-0.3
211
Tumor
-0.3
435
Tumor
-0.3
943
Tumor
-0.3
923
Tumor
-0.4
161
Tumor
-0.4
647
Tumor
-0.4
881
Tumor
-0.4
567
Tumor
-0.4
967
Tumor
-0.4
695
Tumor
-0.4
363
Tumor
-0.4
387
Tumor
-0.4
491
Tumor
-0.4
227
Tumor
-0.4
147
Tumor
-0.4
285
Tumor
-0.5
523
Tumor
-0.5
957
Tumor
-0.5
355
Tumor
-0.5
553
Tumor
-0.5
983
Tumor
-0.5
617
Tumor
-0.5
471
Tumor
-0.5
545
Tumor
-0.5
313
Tumor
-0.5
497
Tumor
-0.5
125
Tumor
-0.6
877
Tumor
-0.6
641
Tumor
-0.6
741
Tumor
-0.6
431
Tumor
-0.6
863
Tumor
-0.6
537
Tumor
-0.6
131
Tumor
-0.7
517
Tumor
-0.7
1013
Tumor
-0.9
965
Tumor
-1.0
351
Tumor
-1.0
743
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
