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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
6.1
nTPM
FANTOM5:
16.8
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 4.9
1830
Male, age 51, unknown
6.0
2586
Male, age 75, left hemisphere
5.3
2828
Female, age 72, unknown
5.3
1870
Female, age 42, unknown
5.2
2666
Male, age 74, left hemisphere
5.1
1833
Male, age 53, unknown
5.0
1827
Male, age 72, unknown
4.8
2219
Male, age 76, both hemispheres
4.5
2411
Female, age 72, unknown
4.2
2019
Male, age 18, unknown
3.9
Dorsal raphe nucleus nTPM: 4.9
2047
Male, age 72, unknown
6.5
1828
Male, age 53, unknown
5.0
2016
Female, age 72, unknown
4.9
2750
Male, age 76, both hemispheres
4.6
2298
Female, age 72, unknown
3.5
Inferior colliculus nTPM: 5.1
2849
Male, age 72, unknown
6.6
1848
Female, age 42, unknown
5.0
1890
Male, age 53, unknown
4.5
2097
Female, age 72, unknown
4.3
Median raphe nucleus nTPM: 6.1
2220
Male, age 76, midline
6.1
Periaquaductal grey, anterior nTPM: 4.2
2502
Female, age 75, unknown
4.4
1947
Male, age 18, unknown
4.3
1795
Male, age 51, unknown
3.9
Periaquaductal grey, dorsal nTPM: 4.5
1840
Male, age 53, unknown
4.9
2850
Male, age 76, both hemispheres
4.8
1831
Male, age 72, unknown
4.2
2464
Female, age 72, unknown
4.0
Periaquaductal grey, lateral nTPM: 4.7
2140
Male, age 76, both hemispheres
5.2
2053
Male, age 18, unknown
4.5
2272
Male, age 74, both hemispheres
4.3
Pretectal area nTPM: 4.9
2825
Male, age 18, unknown
6.7
2316
Male, age 76, right hemisphere
6.3
2407
Male, age 75, both hemispheres
5.6
1817
Female, age 42, unknown
5.3
2224
Female, age 72, unknown
5.3
1944
Female, age 72, unknown
4.5
2273
Male, age 74, both hemispheres
4.4
2667
Female, age 75, unknown
4.4
1816
Male, age 51, unknown
3.8
2007
Male, age 72, unknown
3.8
1815
Male, age 53, unknown
3.7
Red nucleus nTPM: 5.2
2503
Female, age 72, unknown
6.6
2769
Male, age 72, unknown
6.1
2588
Male, age 74, left hemisphere
5.6
2227
Male, age 72, unknown
5.4
2584
Male, age 75, left hemisphere
5.3
2725
Female, age 75, unknown
5.3
1865
Male, age 51, unknown
5.1
2823
Male, age 76, right hemisphere
5.0
2785
Male, age 18, unknown
4.8
1954
Female, age 42, unknown
4.7
1904
Male, age 53, unknown
4.4
1821
Female, age 72, unknown
4.2
Substantia nigra nTPM: 4.6
1941
Male, age 53, unknown
6.1
2583
Male, age 75, right hemisphere
5.2
2699
Male, age 18, unknown
5.1
2590
Female, age 75, unknown
5.0
1851
Male, age 51, unknown
4.8
2409
Female, age 72, unknown
4.5
1916
Female, age 42, unknown
4.4
1889
Female, age 72, unknown
4.2
2665
Male, age 74, both hemispheres
3.8
2241
Male, age 72, unknown
2.5
Superior colliculus nTPM: 4.8
1895
Male, age 76, right hemisphere
5.7
2587
Male, age 74, left hemisphere
5.6
1913
Female, age 42, unknown
5.5
1995
Male, age 72, unknown
5.1
1796
Male, age 53, unknown
4.9
1839
Male, age 51, unknown
4.7
2664
Male, age 75, both hemispheres
4.3
2668
Female, age 75, unknown
4.3
2261
Male, age 18, unknown
4.0
2087
Female, age 72, unknown
3.6
Ventral tegmental area nTPM: 4.7
2223
Female, age 72, unknown
5.4
2021
Male, age 53, unknown
5.0
1942
Male, age 51, unknown
4.9
2218
Male, age 76, both hemispheres
4.6
1915
Female, age 42, unknown
4.4
2410
Female, age 72, unknown
3.8
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
The Human Protein Atlas project is funded
