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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MATR3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
2.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MATR3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.5
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
84.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
83.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
82.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
80.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
80.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
80.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
77.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
73.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
68.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
68.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
68.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
67.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
66.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
66.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
66.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
65.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
65.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
65.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
65.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
65.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
65.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
64.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
64.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
63.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
63.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
62.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
62.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
62.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
61.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
61.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
61.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
61.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
59.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
59.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
59.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
59.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
58.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
58.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
58.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
58.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
57.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
57.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
57.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
55.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
55.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
55.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
55.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
54.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
54.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
54.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
54.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
54.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
53.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
53.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
52.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
52.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
52.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
51.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
51.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
51.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
50.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
50.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
49.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
48.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
48.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
47.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
47.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
47.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
46.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
46.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
46.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
46.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
46.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
45.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
45.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
45.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
45.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
45.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
45.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
44.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
44.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
44.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
44.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
44.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
43.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
43.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
43.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
43.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
42.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
42.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
42.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
41.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
41.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
41.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
41.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
40.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
40.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
39.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
39.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
39.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
39.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
38.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
37.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
36.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
36.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
35.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
35.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
35.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
34.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
32.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
31.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
30.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
30.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
30.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
29.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
29.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
29.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
29.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
26.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
22.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.8
965
Tumor
0.7
865
Tumor
0.7
355
Tumor
0.6
497
Tumor
0.6
351
Tumor
0.6
411
Tumor
0.6
877
Tumor
0.6
285
Tumor
0.6
161
Tumor
0.5
131
Tumor
0.5
123
Tumor
0.5
331
Tumor
0.5
523
Tumor
0.5
665
Tumor
0.5
661
Tumor
0.4
487
Tumor
0.4
431
Tumor
0.4
357
Tumor
0.4
983
Tumor
0.4
443
Tumor
0.4
277
Tumor
0.4
967
Tumor
0.4
1021
Tumor
0.4
425
Tumor
0.4
385
Tumor
0.4
517
Tumor
0.4
313
Tumor
0.4
695
Tumor
0.4
861
Tumor
0.4
951
Tumor
0.4
463
Tumor
0.4
977
Tumor
0.4
383
Tumor
0.4
635
Tumor
0.4
647
Tumor
0.3
1041
Tumor
0.3
571
Tumor
0.3
135
Tumor
0.3
815
Tumor
0.3
737
Tumor
0.3
957
Tumor
0.3
923
Tumor
0.3
413
Tumor
0.3
777
Tumor
0.3
467
Tumor
0.3
813
Tumor
0.3
112
Tumor
0.3
937
Tumor
0.3
883
Tumor
0.3
387
Tumor
0.3
1013
Tumor
0.3
211
Tumor
0.3
271
Tumor
0.3
921
Tumor
0.3
427
Tumor
0.3
727
Tumor
0.3
447
Tumor
0.3
367
Tumor
0.3
267
Tumor
0.2
881
Tumor
0.2
391
Tumor
0.2
1025
Tumor
0.2
785
Tumor
0.2
535
Tumor
0.2
141
Tumor
0.2
1031
Tumor
0.2
663
Tumor
0.2
227
Tumor
0.2
873
Tumor
0.2
213
Tumor
0.2
975
Tumor
0.2
393
Tumor
0.2
814
Normal
0.2
455
Tumor
0.2
953
Tumor
0.2
755
Tumor
0.2
261
Tumor
0.2
363
Tumor
0.2
817
Tumor
0.2
221
Tumor
0.2
557
Tumor
0.2
527
Tumor
0.2
223
Tumor
0.2
473
Tumor
0.2
641
Tumor
0.2
867
Tumor
0.2
617
Tumor
0.2
341
Tumor
0.2
353
Tumor
0.2
545
Tumor
0.1
685
Tumor
0.1
171
Tumor
0.1
715
Tumor
0.1
537
Tumor
0.1
187
Tumor
0.1
217
Tumor
0.1
567
Tumor
0.1
461
Tumor
0.1
433
Tumor
0.1
297
Tumor
0.1
615
Tumor
0.1
671
Tumor
0.1
471
Tumor
0.1
741
Tumor
0.1
724
Normal
0.1
823
Tumor
0.1
185
Tumor
0.1
515
Tumor
0.1
192
Normal
0.1
191
Tumor
0.1
375
Tumor
0.1
943
Tumor
0.1
963
Tumor
0.1
465
Tumor
0.1
423
Tumor
0.1
435
Tumor
0.1
113
Tumor
0.1
451
Tumor
0.1
491
Tumor
0.1
666
Normal
0.1
483
Tumor
0.1
911
Tumor
0.1
713
Tumor
0.0
311
Tumor
0.0
1043
Tumor
0.0
145
Tumor
0.0
421
Tumor
0.0
851
Tumor
0.0
913
Tumor
0.0
384
Normal
0.0
664
Normal
0.0
395
Tumor
0.0
636
Normal
0.0
137
Tumor
0.0
283
Tumor
0.0
493
Tumor
0.0
195
Tumor
0.0
218
Normal
0.0
925
Tumor
0.0
955
Tumor
0.0
563
Tumor
0.0
912
Normal
0.0
415
Tumor
0.0
627
Tumor
0.0
445
Tumor
0.0
396
Normal
0.0
361
Tumor
0.0
744
Normal
0.0
915
Tumor
0.0
686
Normal
0.0
648
Normal
0.0
231
Tumor
0.0
628
Normal
0.0
1027
Tumor
0.0
533
Tumor
0.0
524
Normal
0.0
1045
Tumor
0.0
444
Normal
0.0
146
Normal
0.0
878
Normal
0.0
172
Normal
0.0
162
Normal
0.0
222
Normal
0.0
186
Normal
0.0
721
Tumor
0.0
114
Normal
0.0
196
Normal
0.0
884
Normal
0.0
342
Normal
0.0
857
Tumor
0.0
257
Tumor
0.0
573
Tumor
0.0
525
Tumor
0.0
127
Tumor
0.0
268
Normal
0.0
882
Normal
-0.1
327
Tumor
-0.1
984
Normal
-0.1
376
Normal
-0.1
132
Normal
-0.1
436
Normal
-0.1
742
Normal
-0.1
368
Normal
-0.1
148
Normal
-0.1
136
Normal
-0.1
258
Normal
-0.1
365
Tumor
-0.1
513
Tumor
-0.1
386
Normal
-0.1
352
Normal
-0.1
786
Normal
-0.1
298
Normal
-0.1
392
Normal
-0.1
858
Normal
-0.1
981
Tumor
-0.1
147
Tumor
-0.1
332
Normal
-0.1
412
Normal
-0.1
966
Normal
-0.1
818
Normal
-0.1
214
Normal
-0.1
481
Tumor
-0.1
696
Normal
-0.1
278
Normal
-0.1
314
Normal
-0.1
672
Normal
-0.1
516
Normal
-0.1
343
Tumor
-0.1
662
Normal
-0.1
312
Normal
-0.1
188
Normal
-0.1
618
Normal
-0.1
388
Normal
-0.1
434
Normal
-0.1
464
Normal
-0.1
746
Normal
-0.1
126
Normal
-0.1
538
Normal
-0.1
824
Normal
-0.1
1014
Normal
-0.1
124
Normal
-0.1
394
Normal
-0.1
536
Normal
-0.1
982
Normal
-0.1
616
Normal
-0.1
142
Normal
-0.1
262
Normal
-0.1
697
Tumor
-0.1
477
Tumor
-0.1
492
Normal
-0.1
964
Normal
-0.1
778
Normal
-0.1
553
Tumor
-0.1
938
Normal
-0.1
138
Normal
-0.1
534
Normal
-0.1
232
Normal
-0.1
1026
Normal
-0.1
756
Normal
-0.1
738
Normal
-0.1
125
Tumor
-0.1
1028
Normal
-0.1
498
Normal
-0.1
366
Normal
-0.1
422
Normal
-0.1
968
Normal
-0.1
358
Normal
-0.1
978
Normal
-0.1
568
Normal
-0.1
1016
Normal
-0.1
716
Normal
-0.1
714
Normal
-0.1
574
Normal
-0.1
816
Normal
-0.1
456
Normal
-0.1
1032
Normal
-0.1
448
Normal
-0.1
426
Normal
-0.1
698
Normal
-0.1
958
Normal
-0.1
518
Normal
-0.1
472
Normal
-0.1
272
Normal
-0.1
952
Normal
-0.1
446
Normal
-0.2
1022
Normal
-0.2
462
Normal
-0.2
924
Normal
-0.2
642
Normal
-0.2
554
Normal
-0.2
468
Normal
-0.2
954
Normal
-0.2
362
Normal
-0.2
416
Normal
-0.2
432
Normal
-0.2
414
Normal
-0.2
328
Normal
-0.2
723
Tumor
-0.2
526
Normal
-0.2
866
Normal
-0.2
478
Normal
-0.2
488
Normal
-0.2
1044
Normal
-0.2
944
Normal
-0.2
344
Normal
-0.2
546
Normal
-0.2
452
Normal
-0.2
722
Normal
-0.2
484
Normal
-0.2
482
Normal
-0.2
564
Normal
-0.2
364
Normal
-0.2
528
Normal
-0.2
572
Normal
-0.2
917
Tumor
-0.2
922
Normal
-0.2
111
Normal
-0.2
354
Normal
-0.2
926
Normal
-0.2
356
Normal
-0.2
466
Normal
-0.2
914
Normal
-0.2
474
Normal
-0.2
956
Normal
-0.2
558
Normal
-0.2
494
Normal
-0.2
424
Normal
-0.2
852
Normal
-0.2
728
Normal
-0.2
874
Normal
-0.2
1042
Normal
-0.2
514
Normal
-0.2
1046
Normal
-0.2
976
Normal
-0.2
864
Normal
-0.2
428
Normal
-0.2
228
Normal
-0.2
916
Normal
-0.2
286
Normal
-0.2
862
Normal
-0.2
284
Normal
-0.2
224
Normal
-0.2
128
Normal
-0.3
863
Tumor
-0.3
918
Normal
-0.3
1015
Tumor
-0.3
868
Normal
-0.3
745
Tumor
-0.3
212
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
