HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.8 nTPM
HPA Brain:31.1 nTPM
GTEx:46.8 nTPM
FANTOM5:71.9 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:22.0 nTPM
Allen mouse:2.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 31.1
Sample id Sample description nTPM
Hippocampus
nTPM: 31.1
2529 Female, age 94, left hemisphere 35.8
1898 Male, age 80, left hemisphere 32.4
2148 Female, age 91, left hemisphere 32.2
2621 Female, age 67, right hemisphere 29.7
1855 Male, age 76, left hemisphere 28.6
1911 Female, age 85, right hemisphere 27.9
Dentate gyrus
nTPM: 26.2
2530 Female, age 94, left hemisphere 36.2
2246 Female, age 85, both hemispheres 29.4
2010 Male, age 76, both hemispheres 26.8
1927 Female, age 91, both hemispheres 24.0
2531 Female, age 67, both hemispheres 22.0
2528 Male, age 74, both hemispheres 18.5
Entorhinal gyrus
nTPM: 26.9
1787 Male, age 76, left hemisphere 29.2
1938 Female, age 85, left hemisphere 28.5
2117 Female, age 91, right hemisphere 27.9
2764 Male, age 80, right hemisphere 27.6
2613 Female, age 94, left hemisphere 24.2
2686 Male, age 75, right hemisphere 24.0
Hippocampus, CA1
nTPM: 27.6
2527 Male, age 74, both hemispheres 34.2
2749 Male, age 80, left hemisphere 31.1
1873 Female, age 85, both hemispheres 28.6
2045 Male, age 76, both hemispheres 22.4
2082 Female, age 91, right hemisphere 21.6
Hippocampus, CA2
nTPM: 28.8
1892 Male, age 76, both hemispheres 33.0
2437 Female, age 94, left hemisphere 32.9
1963 Male, age 80, left hemisphere 29.2
1940 Female, age 85, left hemisphere 28.7
2113 Female, age 91, right hemisphere 26.7
2249 Male, age 74, both hemispheres 22.0
Hippocampus, CA3
nTPM: 26.4
1867 Male, age 76, both hemispheres 30.0
2137 Male, age 80, left hemisphere 26.0
2861 Female, age 67, both hemispheres 26.0
1891 Female, age 85, both hemispheres 25.8
2620 Female, age 94, left hemisphere 25.7
2436 Male, age 74, both hemispheres 25.1
Parahippocampal cortex
nTPM: 27.9
1933 Female, age 85, both hemispheres 35.1
2692 Male, age 74, both hemispheres 31.5
2532 Female, age 72, left hemisphere 31.2
2245 Female, age 91, both hemispheres 29.7
2250 Female, age 67, right hemisphere 27.3
1850 Male, age 80, both hemispheres 26.8
2018 Male, age 76, both hemispheres 26.8
1990 Female, age 91, right hemisphere 26.2
2622 Female, age 67, right hemisphere 23.3
2693 Female, age 94, both hemispheres 20.7
Perirhinal gyrus
nTPM: 26.0
1841 Female, age 85, right hemisphere 29.3
1847 Female, age 91, left hemisphere 27.4
1794 Male, age 80, right hemisphere 26.2
2521 Female, age 94, right hemisphere 25.0
2848 Male, age 76, right hemisphere 22.2
Subiculum
nTPM: 30.8
1901 Male, age 80, both hemispheres 34.2
2042 Male, age 76, both hemispheres 33.0
2619 Male, age 74, both hemispheres 32.4
2438 Female, age 94, left hemisphere 31.5
1977 Female, age 85, both hemispheres 29.3
2729 Female, age 91, right hemisphere 24.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 46.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 46.8
Samples: 197

Max nTPM: 139.0
Min nTPM: 27.8
Std nTPM: 11.7
Median nTPM: 44.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 139.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 85.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 76.5
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 74.4
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 73.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 72.8
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 72.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 71.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 67.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 66.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 66.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 71.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.9
FF:10169-103B7 60 years, female 88.2
FF:10153-102I9 76 years, female 55.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 19.9
Pig sample Sample description nTPM
Subiculum
nTPM: 19.0
Samples: 4

Max nTPM: 27.4
Min nTPM: 15.3
Sample A Female 27.4
Sample B Female 16.8
Sample C Male 15.3
Sample D Male 16.3
Dorsal hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 28.7
Min nTPM: 16.3
Sample A Female 28.7
Sample B Female 18.0
Sample C Male 16.3
Sample D Male 16.6
Entorhinal cortex
nTPM: 19.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 15.3
Sample A Female 28.2
Sample B Female 17.3
Sample C Male 16.1
Sample D Male 15.3
Ventral hippocampus
nTPM: 19.8
Samples: 4

Max nTPM: 25.2
Min nTPM: 15.6
Sample A Female 25.2
Sample B Female 15.6
Sample C Male 19.6
Sample D Male 18.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 22.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.9
Samples: 4

Max nTPM: 26.3
Min nTPM: 18.9
Sample A Male 18.9
Sample B Male 20.9
Sample C Female 26.3
Sample D Female 21.3
Hippocampal formation
nTPM: 22.0
Samples: 4

Max nTPM: 23.7
Min nTPM: 20.6
Sample A Male 23.7
Sample B Male 20.6
Sample C Female 21.2
Sample D Female 22.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 2.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.7
68845532 Antisense, RP_050224_02_A02, Mouse strain C57BL/6J (56 days, male) 2.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org