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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO19 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
2.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MYO19 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
231
Samples
Sample
Description
TPM
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
29.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
195
Tumor
2.4
213
Tumor
1.6
411
Tumor
1.6
357
Tumor
1.6
393
Tumor
1.6
191
Tumor
1.5
221
Tumor
1.5
217
Tumor
1.5
473
Tumor
1.3
497
Tumor
1.3
465
Tumor
1.2
192
Normal
1.0
423
Tumor
1.0
527
Tumor
1.0
627
Tumor
0.9
743
Tumor
0.9
957
Tumor
0.9
615
Tumor
0.9
571
Tumor
0.8
222
Normal
0.8
277
Tumor
0.8
1041
Tumor
0.8
355
Tumor
0.8
695
Tumor
0.7
967
Tumor
0.7
231
Tumor
0.7
1013
Tumor
0.7
823
Tumor
0.7
951
Tumor
0.6
491
Tumor
0.6
214
Normal
0.6
257
Tumor
0.6
427
Tumor
0.6
953
Tumor
0.6
445
Tumor
0.6
567
Tumor
0.6
865
Tumor
0.6
493
Tumor
0.5
697
Tumor
0.5
313
Tumor
0.5
365
Tumor
0.5
218
Normal
0.5
1045
Tumor
0.5
815
Tumor
0.5
483
Tumor
0.5
635
Tumor
0.5
361
Tumor
0.5
861
Tumor
0.4
196
Normal
0.4
471
Tumor
0.4
685
Tumor
0.4
665
Tumor
0.4
161
Tumor
0.4
965
Tumor
0.4
351
Tumor
0.4
913
Tumor
0.4
663
Tumor
0.4
481
Tumor
0.4
271
Tumor
0.4
1025
Tumor
0.4
327
Tumor
0.4
857
Tumor
0.4
461
Tumor
0.3
297
Tumor
0.3
537
Tumor
0.3
923
Tumor
0.3
925
Tumor
0.3
1043
Tumor
0.3
867
Tumor
0.3
171
Tumor
0.3
383
Tumor
0.3
211
Tumor
0.3
883
Tumor
0.2
227
Tumor
0.2
513
Tumor
0.2
353
Tumor
0.2
343
Tumor
0.2
267
Tumor
0.2
187
Tumor
0.2
391
Tumor
0.2
443
Tumor
0.1
661
Tumor
0.1
746
Normal
0.1
1027
Tumor
0.1
715
Tumor
0.1
563
Tumor
0.1
413
Tumor
0.1
977
Tumor
0.1
447
Tumor
0.1
261
Tumor
0.1
915
Tumor
0.1
523
Tumor
0.1
557
Tumor
0.1
814
Normal
0.1
515
Tumor
0.1
416
Normal
0.1
873
Tumor
0.1
983
Tumor
0.1
186
Normal
0.0
162
Normal
0.0
358
Normal
0.0
431
Tumor
0.0
573
Tumor
0.0
268
Normal
0.0
636
Normal
0.0
342
Normal
0.0
172
Normal
0.0
647
Tumor
0.0
628
Normal
0.0
914
Normal
0.0
421
Tumor
0.0
278
Normal
0.0
545
Tumor
0.0
141
Tumor
0.0
185
Tumor
0.0
756
Normal
0.0
786
Normal
0.0
1021
Tumor
0.0
148
Normal
0.0
881
Tumor
0.0
911
Tumor
0.0
223
Tumor
0.0
525
Tumor
0.0
877
Tumor
0.0
332
Normal
0.0
1015
Tumor
0.0
128
Normal
0.0
696
Normal
0.0
362
Normal
0.0
1042
Normal
0.0
727
Tumor
0.0
672
Normal
0.0
114
Normal
-0.1
392
Normal
-0.1
341
Tumor
-0.1
298
Normal
-0.1
662
Normal
-0.1
272
Normal
-0.1
455
Tumor
-0.1
425
Tumor
-0.1
858
Normal
-0.1
188
Normal
-0.1
922
Normal
-0.1
433
Tumor
-0.1
1016
Normal
-0.1
982
Normal
-0.1
698
Normal
-0.1
642
Normal
-0.1
535
Tumor
-0.1
943
Tumor
-0.1
124
Normal
-0.1
474
Normal
-0.1
435
Tumor
-0.1
777
Tumor
-0.1
516
Normal
-0.1
463
Tumor
-0.1
966
Normal
-0.1
311
Tumor
-0.1
785
Tumor
-0.1
426
Normal
-0.1
111
Normal
-0.1
824
Normal
-0.1
328
Normal
-0.1
482
Normal
-0.1
364
Normal
-0.1
956
Normal
-0.1
446
Normal
-0.1
641
Tumor
-0.1
354
Normal
-0.1
926
Normal
-0.1
514
Normal
-0.1
648
Normal
-0.1
285
Tumor
-0.1
1031
Tumor
-0.1
813
Tumor
-0.1
984
Normal
-0.1
916
Normal
-0.1
952
Normal
-0.1
921
Tumor
-0.1
422
Normal
-0.2
472
Normal
-0.2
981
Tumor
-0.2
617
Tumor
-0.2
818
Normal
-0.2
368
Normal
-0.2
526
Normal
-0.2
574
Normal
-0.2
924
Normal
-0.2
884
Normal
-0.2
395
Tumor
-0.2
955
Tumor
-0.2
618
Normal
-0.2
146
Normal
-0.2
145
Tumor
-0.2
1014
Normal
-0.2
428
Normal
-0.2
262
Normal
-0.2
1022
Normal
-0.2
125
Tumor
-0.2
394
Normal
-0.2
127
Tumor
-0.2
616
Normal
-0.2
553
Tumor
-0.2
713
Tumor
-0.2
132
Normal
-0.2
434
Normal
-0.2
671
Tumor
-0.2
412
Normal
-0.2
1032
Normal
-0.2
366
Normal
-0.2
147
Tumor
-0.2
741
Tumor
-0.2
424
Normal
-0.2
686
Normal
-0.2
436
Normal
-0.2
963
Tumor
-0.2
1046
Normal
-0.2
498
Normal
-0.2
568
Normal
-0.2
312
Normal
-0.2
863
Tumor
-0.3
484
Normal
-0.3
546
Normal
-0.3
414
Normal
-0.3
572
Normal
-0.3
975
Tumor
-0.3
452
Normal
-0.3
356
Normal
-0.3
467
Tumor
-0.3
918
Normal
-0.3
724
Normal
-0.3
258
Normal
-0.3
494
Normal
-0.3
878
Normal
-0.3
664
Normal
-0.3
554
Normal
-0.3
451
Tumor
-0.3
778
Normal
-0.3
964
Normal
-0.3
722
Normal
-0.3
232
Normal
-0.3
978
Normal
-0.3
958
Normal
-0.3
1026
Normal
-0.3
331
Tumor
-0.3
492
Normal
-0.3
126
Normal
-0.3
882
Normal
-0.3
538
Normal
-0.3
716
Normal
-0.3
723
Tumor
-0.3
344
Normal
-0.3
755
Tumor
-0.3
138
Normal
-0.3
363
Tumor
-0.3
478
Normal
-0.3
448
Normal
-0.3
517
Tumor
-0.3
917
Tumor
-0.3
352
Normal
-0.3
444
Normal
-0.3
534
Normal
-0.3
937
Tumor
-0.3
464
Normal
-0.3
396
Normal
-0.3
314
Normal
-0.3
137
Tumor
-0.4
286
Normal
-0.4
528
Normal
-0.4
666
Normal
-0.4
212
Normal
-0.4
852
Normal
-0.4
375
Tumor
-0.4
432
Normal
-0.4
113
Tumor
-0.4
388
Normal
-0.4
376
Normal
-0.4
737
Tumor
-0.4
866
Normal
-0.4
488
Normal
-0.4
384
Normal
-0.4
142
Normal
-0.4
564
Normal
-0.4
1044
Normal
-0.4
968
Normal
-0.4
874
Normal
-0.4
283
Tumor
-0.4
536
Normal
-0.4
466
Normal
-0.4
524
Normal
-0.4
714
Normal
-0.4
284
Normal
-0.4
954
Normal
-0.4
1028
Normal
-0.4
131
Tumor
-0.4
415
Tumor
-0.4
976
Normal
-0.4
868
Normal
-0.5
745
Tumor
-0.5
386
Normal
-0.5
112
Tumor
-0.5
912
Normal
-0.5
728
Normal
-0.5
816
Normal
-0.5
367
Tumor
-0.5
738
Normal
-0.5
518
Normal
-0.5
817
Tumor
-0.5
477
Tumor
-0.5
487
Tumor
-0.5
864
Normal
-0.6
944
Normal
-0.6
123
Tumor
-0.6
558
Normal
-0.6
744
Normal
-0.6
136
Normal
-0.6
224
Normal
-0.6
456
Normal
-0.6
468
Normal
-0.6
135
Tumor
-0.6
385
Tumor
-0.6
533
Tumor
-0.7
228
Normal
-0.7
462
Normal
-0.7
387
Tumor
-0.7
862
Normal
-0.7
938
Normal
-0.8
721
Tumor
-0.8
742
Normal
-0.9
851
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
