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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
196.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
583.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
532.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
473.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
451.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
449.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
447.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
439.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
389.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
378.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
374.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
365.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
364.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
359.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
354.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
353.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
345.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
342.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
342.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
339.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
338.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
337.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
337.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
325.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
325.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
320.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
318.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
310.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
299.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
298.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
296.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
296.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
294.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
292.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
291.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
290.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
289.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
289.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
288.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
283.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
282.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
282.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
282.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
281.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
281.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
280.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
280.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
280.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
278.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
278.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
278.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
277.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
274.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
274.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
274.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
273.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
272.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
269.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
268.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
264.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
263.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
262.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
261.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
260.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
258.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
257.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
256.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
255.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
255.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
255.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
254.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
254.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
253.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
249.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
248.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
248.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
248.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
246.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
246.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
245.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
240.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
240.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
240.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
239.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
239.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
238.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
238.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
237.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
237.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
237.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
235.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
235.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
234.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
233.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
229.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
226.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
226.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
226.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
225.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
224.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
224.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
224.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
224.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
223.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
223.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
222.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
221.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
220.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
220.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
220.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
219.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
217.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
217.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
216.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
216.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
216.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
216.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
215.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
215.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
213.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
213.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
213.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
212.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
212.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
211.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
211.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
210.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
210.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
209.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
209.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
209.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
209.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
208.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
208.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
207.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
207.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
205.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
205.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
204.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
204.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
203.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
203.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
202.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
202.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
201.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
201.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
198.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
198.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
198.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
198.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
197.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
197.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
197.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
197.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
197.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
196.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
196.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
196.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
195.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
195.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
194.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
194.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
193.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
193.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
193.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
193.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
192.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
192.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
191.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
190.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
189.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
187.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
187.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
187.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
187.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
185.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
185.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
184.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
184.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
183.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
182.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
182.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
182.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
181.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
181.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
181.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
180.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
179.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
179.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
177.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
177.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
177.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
177.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
176.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
175.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
175.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
174.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
173.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
172.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
172.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
172.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
171.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
170.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
170.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
170.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
170.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
169.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
169.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
169.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
168.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
167.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
167.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
167.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
167.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
167.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
167.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
167.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
167.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
166.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
166.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
166.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
166.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
165.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
165.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
164.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
164.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
164.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
163.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
162.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
162.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
162.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
162.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
162.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
161.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
160.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
160.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
160.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
160.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
159.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
159.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
159.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
158.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
157.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
157.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
157.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
157.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
156.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
156.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
155.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
155.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
155.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
155.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
155.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
154.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
153.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
153.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
153.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
152.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
152.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
152.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
152.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
151.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
151.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
150.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
150.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
150.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
149.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
148.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
148.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
148.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
147.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
147.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
146.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
145.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
145.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
144.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
143.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
143.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
142.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
141.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
140.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
140.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
140.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
140.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
139.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
139.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
139.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
138.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
138.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
137.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
136.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
136.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
136.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
135.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
135.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
135.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
135.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
134.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
134.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
134.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
134.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
134.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
134.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
133.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
133.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
132.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
131.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
131.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
131.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
130.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
129.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
128.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
127.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
124.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
123.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
123.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
122.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
121.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
121.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
119.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
118.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
118.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
118.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
116.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
116.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
116.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
115.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
114.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
112.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
112.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
110.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
110.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
108.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
108.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
107.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
107.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
104.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
101.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
101.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
100.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
99.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
98.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
98.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
97.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
93.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
92.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
92.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
91.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
90.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
89.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
88.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
86.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
84.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
82.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
81.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
81.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
78.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
74.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
74.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
67.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMB3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
162.9
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
670.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
570.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
465.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
462.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
457.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
436.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
402.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
385.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
381.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
364.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
360.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
358.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
321.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
300.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
299.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
264.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
259.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
253.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
249.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
247.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
246.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
245.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
235.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
234.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
234.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
234.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
233.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
233.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
230.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
229.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
226.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
224.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
223.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
222.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
221.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
221.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
218.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
216.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
213.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
213.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
211.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
207.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
203.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
201.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
199.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
197.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
196.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
195.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
193.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
192.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
192.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
192.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
191.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
189.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
188.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
188.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
187.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
186.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
186.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
186.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
186.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
184.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
184.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
182.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
178.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
174.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
173.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
173.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
173.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
172.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
171.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
171.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
171.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
171.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
170.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
170.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
169.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
169.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
168.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
167.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
166.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
166.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
166.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
165.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
165.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
164.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
163.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
161.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
160.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
160.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
160.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
159.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
158.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
157.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
156.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
156.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
155.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
154.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
153.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
153.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
152.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
151.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
150.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
149.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
149.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
149.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
148.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
147.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
147.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
146.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
146.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
145.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
145.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
143.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
143.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
143.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
142.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
142.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
142.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
142.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
142.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
141.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
140.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
140.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
139.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
139.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
139.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
139.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
138.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
138.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
137.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
137.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
136.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
135.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
135.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
135.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
133.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
131.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
131.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
130.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
129.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
129.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
129.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
129.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
129.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
128.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
126.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
126.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
124.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
124.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
123.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
123.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
123.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
123.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
122.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
122.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
120.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
119.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
119.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
117.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
117.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
117.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
116.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
116.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
115.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
115.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
115.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
114.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
114.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
113.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
112.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
111.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
110.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
110.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
109.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
108.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
108.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
107.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
106.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
106.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
105.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
105.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
105.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
104.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
103.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
103.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
102.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
102.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
102.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
102.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
102.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
101.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
101.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
101.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
100.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
100.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
100.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
99.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
98.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
98.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
97.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
97.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
95.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
93.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
92.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
91.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
91.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
90.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
90.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
90.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
89.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
89.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
87.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
87.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
86.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
85.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
84.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
83.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
78.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
78.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
75.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
73.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
70.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
65.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
64.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
64.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
57.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
54.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
43.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
456
Normal
0.7
436
Normal
0.6
432
Normal
0.6
342
Normal
0.5
714
Normal
0.5
162
Normal
0.5
148
Normal
0.5
314
Normal
0.5
298
Normal
0.5
354
Normal
0.5
952
Normal
0.5
146
Normal
0.5
258
Normal
0.4
128
Normal
0.4
513
Tumor
0.4
777
Tumor
0.4
615
Tumor
0.4
824
Normal
0.4
422
Normal
0.4
912
Normal
0.4
272
Normal
0.4
756
Normal
0.4
464
Normal
0.4
262
Normal
0.4
426
Normal
0.4
424
Normal
0.4
353
Tumor
0.4
926
Normal
0.4
738
Normal
0.4
666
Normal
0.4
862
Normal
0.4
616
Normal
0.4
214
Normal
0.4
414
Normal
0.4
218
Normal
0.4
416
Normal
0.4
132
Normal
0.4
386
Normal
0.4
564
Normal
0.4
1044
Normal
0.4
662
Normal
0.4
222
Normal
0.4
568
Normal
0.4
858
Normal
0.4
136
Normal
0.4
1026
Normal
0.4
388
Normal
0.3
376
Normal
0.3
664
Normal
0.3
212
Normal
0.3
423
Tumor
0.3
723
Tumor
0.3
114
Normal
0.3
196
Normal
0.3
113
Tumor
0.3
364
Normal
0.3
138
Normal
0.3
482
Normal
0.3
882
Normal
0.3
358
Normal
0.3
914
Normal
0.3
628
Normal
0.3
818
Normal
0.3
1032
Normal
0.3
866
Normal
0.3
642
Normal
0.3
955
Tumor
0.3
332
Normal
0.3
816
Normal
0.3
514
Normal
0.3
1042
Normal
0.3
648
Normal
0.3
368
Normal
0.3
186
Normal
0.3
957
Tumor
0.3
627
Tumor
0.3
728
Normal
0.3
618
Normal
0.3
884
Normal
0.3
698
Normal
0.3
188
Normal
0.3
663
Tumor
0.3
366
Normal
0.3
312
Normal
0.3
468
Normal
0.3
362
Normal
0.3
428
Normal
0.3
394
Normal
0.3
111
Normal
0.3
978
Normal
0.3
127
Tumor
0.3
716
Normal
0.3
742
Normal
0.3
172
Normal
0.3
528
Normal
0.2
964
Normal
0.2
534
Normal
0.2
1016
Normal
0.2
284
Normal
0.2
232
Normal
0.2
217
Tumor
0.2
944
Normal
0.2
1022
Normal
0.2
635
Tumor
0.2
958
Normal
0.2
722
Normal
0.2
494
Normal
0.2
857
Tumor
0.2
327
Tumor
0.2
878
Normal
0.2
852
Normal
0.2
1028
Normal
0.2
344
Normal
0.2
313
Tumor
0.2
434
Normal
0.2
982
Normal
0.2
228
Normal
0.2
484
Normal
0.2
874
Normal
0.2
558
Normal
0.2
515
Tumor
0.2
396
Normal
0.2
786
Normal
0.2
446
Normal
0.2
268
Normal
0.2
384
Normal
0.2
1014
Normal
0.2
956
Normal
0.2
636
Normal
0.2
868
Normal
0.2
278
Normal
0.2
924
Normal
0.2
415
Tumor
0.2
864
Normal
0.2
574
Normal
0.2
746
Normal
0.2
411
Tumor
0.2
142
Normal
0.2
696
Normal
0.2
478
Normal
0.2
356
Normal
0.2
755
Tumor
0.2
147
Tumor
0.2
778
Normal
0.1
126
Normal
0.1
1015
Tumor
0.1
572
Normal
0.1
286
Normal
0.1
466
Normal
0.1
1013
Tumor
0.1
352
Normal
0.1
412
Normal
0.1
922
Normal
0.1
477
Tumor
0.1
867
Tumor
0.1
161
Tumor
0.1
516
Normal
0.1
192
Normal
0.1
392
Normal
0.1
1046
Normal
0.1
448
Normal
0.1
452
Normal
0.1
672
Normal
0.1
695
Tumor
0.1
981
Tumor
0.1
474
Normal
0.1
661
Tumor
0.1
938
Normal
0.1
277
Tumor
0.1
968
Normal
0.1
518
Normal
0.1
966
Normal
0.1
744
Normal
0.1
124
Normal
0.1
861
Tumor
0.1
925
Tumor
0.1
328
Normal
0.1
873
Tumor
0.1
444
Normal
0.1
1027
Tumor
0.1
953
Tumor
0.1
741
Tumor
0.0
724
Normal
0.0
1031
Tumor
0.0
141
Tumor
0.0
557
Tumor
0.0
462
Normal
0.0
341
Tumor
0.0
481
Tumor
0.0
546
Normal
0.0
195
Tumor
0.0
686
Normal
0.0
727
Tumor
0.0
913
Tumor
0.0
257
Tumor
0.0
617
Tumor
0.0
467
Tumor
0.0
814
Normal
0.0
451
Tumor
0.0
976
Normal
0.0
984
Normal
0.0
213
Tumor
0.0
131
Tumor
0.0
387
Tumor
0.0
145
Tumor
0.0
224
Normal
0.0
361
Tumor
0.0
665
Tumor
0.0
1043
Tumor
0.0
435
Tumor
-0.1
498
Normal
-0.1
851
Tumor
-0.1
261
Tumor
-0.1
524
Normal
-0.1
365
Tumor
-0.1
563
Tumor
-0.1
493
Tumor
-0.1
863
Tumor
-0.1
954
Normal
-0.1
391
Tumor
-0.1
526
Normal
-0.1
123
Tumor
-0.1
823
Tumor
-0.1
916
Normal
-0.1
363
Tumor
-0.1
191
Tumor
-0.1
911
Tumor
-0.1
815
Tumor
-0.1
445
Tumor
-0.1
112
Tumor
-0.1
185
Tumor
-0.1
227
Tumor
-0.1
472
Normal
-0.1
488
Normal
-0.1
865
Tumor
-0.1
923
Tumor
-0.1
431
Tumor
-0.1
461
Tumor
-0.1
573
Tumor
-0.1
533
Tumor
-0.1
355
Tumor
-0.1
523
Tumor
-0.1
647
Tumor
-0.1
951
Tumor
-0.1
433
Tumor
-0.1
737
Tumor
-0.1
223
Tumor
-0.2
492
Normal
-0.2
536
Normal
-0.2
211
Tumor
-0.2
385
Tumor
-0.2
413
Tumor
-0.2
357
Tumor
-0.2
343
Tumor
-0.2
443
Tumor
-0.2
567
Tumor
-0.2
1045
Tumor
-0.2
571
Tumor
-0.2
271
Tumor
-0.2
713
Tumor
-0.2
721
Tumor
-0.2
267
Tumor
-0.2
383
Tumor
-0.2
455
Tumor
-0.2
187
Tumor
-0.2
393
Tumor
-0.2
977
Tumor
-0.2
137
Tumor
-0.2
465
Tumor
-0.3
745
Tumor
-0.3
715
Tumor
-0.3
641
Tumor
-0.3
497
Tumor
-0.3
375
Tumor
-0.3
421
Tumor
-0.3
473
Tumor
-0.3
525
Tumor
-0.3
311
Tumor
-0.3
915
Tumor
-0.3
135
Tumor
-0.3
813
Tumor
-0.3
351
Tumor
-0.3
671
Tumor
-0.3
1041
Tumor
-0.3
697
Tumor
-0.3
297
Tumor
-0.3
538
Normal
-0.3
881
Tumor
-0.3
367
Tumor
-0.3
487
Tumor
-0.3
125
Tumor
-0.4
331
Tumor
-0.4
483
Tumor
-0.4
983
Tumor
-0.4
943
Tumor
-0.4
171
Tumor
-0.4
975
Tumor
-0.4
491
Tumor
-0.4
447
Tumor
-0.4
527
Tumor
-0.4
785
Tumor
-0.4
967
Tumor
-0.4
535
Tumor
-0.4
685
Tumor
-0.4
743
Tumor
-0.4
427
Tumor
-0.4
937
Tumor
-0.4
554
Normal
-0.4
231
Tumor
-0.4
537
Tumor
-0.4
517
Tumor
-0.4
395
Tumor
-0.5
1025
Tumor
-0.5
425
Tumor
-0.5
883
Tumor
-0.5
221
Tumor
-0.5
817
Tumor
-0.5
283
Tumor
-0.5
963
Tumor
-0.5
463
Tumor
-0.5
471
Tumor
-0.5
918
Normal
-0.5
1021
Tumor
-0.6
921
Tumor
-0.6
553
Tumor
-0.6
545
Tumor
-0.6
285
Tumor
-0.7
877
Tumor
-0.7
917
Tumor
-0.7
965
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.