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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MARCKS is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
209.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
145.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
129.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
118.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
107.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
98.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
97.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
95.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
95.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
85.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
66.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
63.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
63.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
62.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
60.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
54.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
53.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
51.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
50.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
49.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
48.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
45.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
45.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
44.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
43.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
43.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
42.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
42.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
41.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
41.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
41.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
39.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
36.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
36.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
34.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
33.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
30.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
28.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
28.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
28.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
27.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
27.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
26.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
26.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
22.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
21.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
18.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
16.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MARCKS is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.6
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
170.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
140.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
105.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
93.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
89.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
85.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
82.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
80.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
76.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
72.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
68.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
66.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
66.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
66.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
65.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
65.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
63.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
63.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
63.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
62.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
62.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
59.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
59.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
58.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
57.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
56.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
55.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
53.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
52.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
50.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
43.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
43.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
42.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
41.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
40.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
39.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
38.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
38.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
38.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
37.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
37.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
35.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
35.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
31.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
30.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
29.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
26.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
22.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.9
737
Tumor
1.4
661
Tumor
1.4
283
Tumor
1.3
367
Tumor
1.3
497
Tumor
1.3
943
Tumor
1.3
967
Tumor
1.2
413
Tumor
1.1
285
Tumor
1.1
363
Tumor
1.1
951
Tumor
1.1
917
Tumor
1.0
965
Tumor
1.0
536
Normal
0.9
478
Normal
0.9
724
Normal
0.9
311
Tumor
0.8
814
Normal
0.8
387
Tumor
0.8
192
Normal
0.8
211
Tumor
0.8
525
Tumor
0.7
851
Tumor
0.7
498
Normal
0.7
545
Tumor
0.7
391
Tumor
0.7
537
Tumor
0.7
727
Tumor
0.7
447
Tumor
0.7
963
Tumor
0.7
538
Normal
0.7
455
Tumor
0.7
815
Tumor
0.7
923
Tumor
0.6
223
Tumor
0.6
813
Tumor
0.6
535
Tumor
0.6
221
Tumor
0.6
135
Tumor
0.6
817
Tumor
0.6
375
Tumor
0.6
415
Tumor
0.6
463
Tumor
0.6
1031
Tumor
0.6
524
Normal
0.6
697
Tumor
0.5
473
Tumor
0.5
975
Tumor
0.5
881
Tumor
0.5
966
Normal
0.5
492
Normal
0.5
383
Tumor
0.5
224
Normal
0.5
916
Normal
0.5
921
Tumor
0.5
695
Tumor
0.4
355
Tumor
0.4
217
Tumor
0.4
567
Tumor
0.4
444
Normal
0.4
715
Tumor
0.4
125
Tumor
0.4
351
Tumor
0.4
434
Normal
0.4
331
Tumor
0.4
553
Tumor
0.4
865
Tumor
0.4
958
Normal
0.3
471
Tumor
0.3
343
Tumor
0.3
1015
Tumor
0.3
227
Tumor
0.3
1044
Normal
0.3
297
Tumor
0.3
883
Tumor
0.3
385
Tumor
0.3
976
Normal
0.3
857
Tumor
0.3
185
Tumor
0.3
421
Tumor
0.3
516
Normal
0.3
467
Tumor
0.2
491
Tumor
0.2
425
Tumor
0.2
744
Normal
0.2
978
Normal
0.2
212
Normal
0.2
1045
Tumor
0.2
954
Normal
0.2
937
Tumor
0.2
671
Tumor
0.2
1025
Tumor
0.2
778
Normal
0.2
123
Tumor
0.2
968
Normal
0.2
1028
Normal
0.2
271
Tumor
0.2
977
Tumor
0.2
713
Tumor
0.2
344
Normal
0.2
395
Tumor
0.2
984
Normal
0.1
852
Normal
0.1
427
Tumor
0.1
665
Tumor
0.1
563
Tumor
0.1
131
Tumor
0.1
743
Tumor
0.1
721
Tumor
0.1
188
Normal
0.1
523
Tumor
0.1
956
Normal
0.1
554
Normal
0.1
386
Normal
0.1
686
Normal
0.1
268
Normal
0.1
573
Tumor
0.1
663
Tumor
0.1
195
Tumor
0.1
716
Normal
0.1
913
Tumor
0.1
477
Tumor
0.1
672
Normal
0.1
952
Normal
0.1
146
Normal
0.1
124
Normal
0.0
126
Normal
0.0
433
Tumor
0.0
214
Normal
0.0
823
Tumor
0.0
262
Normal
0.0
412
Normal
0.0
384
Normal
0.0
284
Normal
0.0
416
Normal
0.0
517
Tumor
0.0
924
Normal
0.0
187
Tumor
0.0
368
Normal
0.0
488
Normal
0.0
641
Tumor
0.0
494
Normal
0.0
461
Tumor
0.0
878
Normal
0.0
213
Tumor
0.0
738
Normal
0.0
957
Tumor
0.0
364
Normal
0.0
145
Tumor
0.0
728
Normal
-0.1
874
Normal
-0.1
546
Normal
-0.1
723
Tumor
-0.1
696
Normal
-0.1
352
Normal
-0.1
918
Normal
-0.1
877
Tumor
-0.1
1046
Normal
-0.1
448
Normal
-0.1
785
Tumor
-0.1
816
Normal
-0.1
312
Normal
-0.1
218
Normal
-0.1
1021
Tumor
-0.1
922
Normal
-0.1
228
Normal
-0.2
456
Normal
-0.2
944
Normal
-0.2
514
Normal
-0.2
698
Normal
-0.2
191
Tumor
-0.2
365
Tumor
-0.2
528
Normal
-0.2
722
Normal
-0.2
1014
Normal
-0.2
518
Normal
-0.2
411
Tumor
-0.2
938
Normal
-0.2
926
Normal
-0.2
137
Tumor
-0.2
953
Tumor
-0.2
286
Normal
-0.2
558
Normal
-0.2
277
Tumor
-0.2
362
Normal
-0.2
982
Normal
-0.2
964
Normal
-0.3
925
Tumor
-0.3
138
Normal
-0.3
714
Normal
-0.3
786
Normal
-0.3
1032
Normal
-0.3
366
Normal
-0.3
432
Normal
-0.3
483
Tumor
-0.3
534
Normal
-0.3
742
Normal
-0.3
474
Normal
-0.3
392
Normal
-0.3
267
Tumor
-0.3
493
Tumor
-0.3
1026
Normal
-0.3
666
Normal
-0.3
868
Normal
-0.3
354
Normal
-0.3
341
Tumor
-0.3
955
Tumor
-0.3
451
Tumor
-0.3
617
Tumor
-0.3
662
Normal
-0.3
1022
Normal
-0.3
628
Normal
-0.3
356
Normal
-0.3
468
Normal
-0.4
1016
Normal
-0.4
396
Normal
-0.4
866
Normal
-0.4
914
Normal
-0.4
231
Tumor
-0.4
361
Tumor
-0.4
142
Normal
-0.4
161
Tumor
-0.4
527
Tumor
-0.4
261
Tumor
-0.4
1043
Tumor
-0.4
1042
Normal
-0.4
443
Tumor
-0.4
332
Normal
-0.4
394
Normal
-0.4
272
Normal
-0.4
327
Tumor
-0.4
864
Normal
-0.4
1013
Tumor
-0.4
818
Normal
-0.4
342
Normal
-0.4
741
Tumor
-0.4
472
Normal
-0.4
526
Normal
-0.4
376
Normal
-0.4
863
Tumor
-0.4
196
Normal
-0.4
353
Tumor
-0.5
141
Tumor
-0.5
172
Normal
-0.5
424
Normal
-0.5
422
Normal
-0.5
884
Normal
-0.5
574
Normal
-0.5
328
Normal
-0.5
148
Normal
-0.5
515
Tumor
-0.5
627
Tumor
-0.5
861
Tumor
-0.5
162
Normal
-0.5
313
Tumor
-0.5
112
Tumor
-0.5
746
Normal
-0.5
452
Normal
-0.5
858
Normal
-0.5
136
Normal
-0.5
111
Normal
-0.5
484
Normal
-0.6
862
Normal
-0.6
466
Normal
-0.6
446
Normal
-0.6
278
Normal
-0.6
873
Tumor
-0.6
388
Normal
-0.6
572
Normal
-0.6
258
Normal
-0.6
298
Normal
-0.6
114
Normal
-0.6
428
Normal
-0.6
824
Normal
-0.6
431
Tumor
-0.6
171
Tumor
-0.6
358
Normal
-0.6
756
Normal
-0.6
232
Normal
-0.6
414
Normal
-0.6
685
Tumor
-0.6
464
Normal
-0.7
426
Normal
-0.7
147
Tumor
-0.7
557
Tumor
-0.7
882
Normal
-0.7
186
Normal
-0.7
664
Normal
-0.7
132
Normal
-0.7
487
Tumor
-0.7
482
Normal
-0.7
462
Normal
-0.7
616
Normal
-0.7
642
Normal
-0.7
222
Normal
-0.7
314
Normal
-0.7
867
Tumor
-0.8
571
Tumor
-0.8
127
Tumor
-0.8
915
Tumor
-0.8
568
Normal
-0.8
912
Normal
-0.8
257
Tumor
-0.8
636
Normal
-0.8
1041
Tumor
-0.8
423
Tumor
-0.9
533
Tumor
-0.9
113
Tumor
-0.9
513
Tumor
-0.9
745
Tumor
-0.9
618
Normal
-0.9
648
Normal
-0.9
564
Normal
-0.9
436
Normal
-1.0
481
Tumor
-1.0
647
Tumor
-1.0
435
Tumor
-1.1
755
Tumor
-1.1
128
Normal
-1.1
981
Tumor
-1.1
615
Tumor
-1.1
777
Tumor
-1.2
393
Tumor
-1.3
445
Tumor
-1.3
1027
Tumor
-1.5
465
Tumor
-1.5
357
Tumor
-1.5
911
Tumor
-1.7
635
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.