Expression of RCC1L in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

RCC1L is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 31.7

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

29.5

Number of samples

362

Samples

Sample	Description	TPM
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	82.9
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	69.2
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	68.3
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	67.3
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	56.8
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	55.9
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	54.9
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	54.4
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	54.0
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	53.8
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	53.2
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	53.1
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	52.6
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	52.2
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	50.9
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	50.5
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	50.4
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	50.0
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	49.6
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	49.4
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	48.7
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	48.6
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	48.5
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	48.0
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	47.9
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	47.7
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	47.4
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	47.1
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	47.0
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	46.8
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	46.2
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	46.1
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	45.7
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	45.7
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	45.6
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	45.0
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	44.9
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	44.7
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	44.6
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	44.4
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	44.3
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	43.9
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	43.8
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	43.7
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	43.4
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	43.3
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	43.2
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	42.5
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	42.4
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	42.3
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	42.3
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	41.8
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	41.7
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	41.7
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	41.5
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	41.4
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	41.3
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	40.9
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	40.7
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	40.7
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	40.6
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	39.9
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	39.6
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	39.5
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	39.3
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	39.0
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	38.5
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	38.4
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	38.2
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	38.2
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	37.6
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	37.6
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	37.5
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	37.1
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	36.7
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	36.7
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	36.7
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	36.6
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	36.2
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	36.2
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	36.1
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	36.0
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	35.5
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	35.5
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	35.5
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	35.5
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	35.4
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	35.4
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	34.8
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	34.6
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	34.5
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	34.4
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	34.3
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	34.2
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	34.1
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	34.1
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	34.1
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	34.0
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	33.9
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	33.8
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	33.8
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	33.8
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	33.7
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	33.6
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	33.6
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	33.6
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	33.4
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	33.4
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	33.2
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	33.1
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	33.1
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	33.1
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	33.0
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	32.8
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	32.7
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	32.5
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	32.5
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	32.1
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	32.1
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	32.1
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	31.9
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	31.5
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	31.5
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	31.3
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	31.3
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	31.2
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	31.2
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	31.0
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	30.9
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	30.9
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	30.9
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	30.8
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	30.7
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	30.6
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	30.6
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	30.5
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	30.3
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	30.2
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	30.2
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	30.2
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	30.2
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	30.1
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	30.1
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	30.1
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	30.1
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	30.1
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	30.0
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	30.0
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	29.9
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	29.9
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	29.8
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	29.7
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	29.6
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	29.5
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	29.5
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	29.5
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	29.5
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	29.5
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	29.4
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	29.4
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	29.4
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	29.3
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	29.2
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	29.1
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	28.9
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	28.9
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	28.8
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	28.8
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	28.1
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	28.0
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	28.0
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	28.0
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	27.9
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	27.9
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	27.9
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	27.9
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	27.9
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	27.8
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	27.8
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	27.7
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	27.6
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	27.5
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	27.5
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	27.5
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	27.5
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	27.5
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	27.4
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	27.4
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	27.4
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	27.4
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	27.3
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	27.3
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	27.3
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	27.1
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	27.0
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	26.8
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	26.5
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	26.5
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	26.4
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	26.4
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	26.3
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	26.3
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	26.2
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	26.2
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	26.0
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	26.0
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	25.7
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	25.7
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	25.6
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	25.6
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	25.5
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	25.4
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	25.3
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	25.2
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	25.2
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	25.2
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	25.2
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	25.1
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	25.0
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	24.9
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	24.9
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	24.9
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	24.8
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	24.7
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	24.6
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	24.6
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	24.6
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	24.6
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	24.5
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	24.5
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	24.4
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	24.3
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	24.3
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	24.3
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	24.3
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	24.2
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	24.1
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	23.9
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	23.9
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	23.9
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	23.9
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	23.8
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	23.7
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	23.7
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	23.7
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	23.6
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	23.6
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	23.6
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	23.5
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	23.5
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	23.5
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	23.4
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	23.2
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	23.2
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	23.1
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	23.1
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	23.0
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	23.0
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	23.0
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	22.9
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	22.9
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	22.7
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	22.7
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	22.6
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	22.5
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	22.5
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	22.5
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	22.4
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	22.3
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	22.2
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	22.2
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	22.0
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	21.9
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	21.8
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	21.7
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	21.5
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	21.5
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	21.3
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	21.3
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	21.3
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	21.3
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	21.2
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	21.2
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	21.1
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	21.0
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	21.0
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	21.0
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	21.0
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	21.0
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	21.0
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	21.0
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	20.9
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	20.9
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	20.8
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	20.8
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	20.7
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	20.7
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	20.6
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	20.6
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	20.5
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	20.4
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	20.4
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	20.4
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	20.3
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	20.2
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	20.0
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	19.9
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	19.4
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	19.4
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	19.3
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	19.0
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	19.0
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	18.9
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	18.9
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	18.9
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	18.9
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	18.8
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	18.7
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	18.6
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	18.3
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	17.8
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	17.6
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	17.4
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	17.2
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	17.2
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	17.2
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	17.1
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	17.1
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	17.0
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	16.9
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	16.5
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	16.4
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	16.4
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	16.3
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	16.3
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	15.9
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	15.8
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	15.6
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	15.6
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	15.4
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	15.4
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	15.2
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	15.1
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	15.0
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	14.9
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	14.8
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	14.8
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	14.4
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	14.4
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	14.1
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	13.7
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	13.7
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	13.2
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	12.5
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	11.9
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	11.9
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	11.4
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	11.1
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	10.2
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	9.9
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	9.7
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	9.1
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
967	Tumor	1.3
925	Tumor	1.0
477	Tumor	0.9
537	Tumor	0.9
391	Tumor	0.9
231	Tumor	0.9
435	Tumor	0.8
483	Tumor	0.8
513	Tumor	0.7
865	Tumor	0.7
473	Tumor	0.7
957	Tumor	0.7
1013	Tumor	0.6
965	Tumor	0.6
267	Tumor	0.6
367	Tumor	0.6
1025	Tumor	0.6
915	Tumor	0.6
465	Tumor	0.6
452	Normal	0.6
491	Tumor	0.5
571	Tumor	0.5
363	Tumor	0.5
1031	Tumor	0.5
393	Tumor	0.5
171	Tumor	0.5
641	Tumor	0.5
745	Tumor	0.5
147	Tumor	0.5
227	Tumor	0.5
358	Normal	0.5
468	Normal	0.4
1043	Tumor	0.4
713	Tumor	0.4
883	Tumor	0.4
755	Tumor	0.4
627	Tumor	0.4
361	Tumor	0.4
517	Tumor	0.4
365	Tumor	0.4
145	Tumor	0.4
615	Tumor	0.4
742	Normal	0.4
525	Tumor	0.4
741	Tumor	0.4
1041	Tumor	0.3
1045	Tumor	0.3
727	Tumor	0.3
127	Tumor	0.3
695	Tumor	0.3
394	Normal	0.3
926	Normal	0.3
648	Normal	0.3
983	Tumor	0.3
647	Tumor	0.3
661	Tumor	0.3
924	Normal	0.3
785	Tumor	0.3
564	Normal	0.3
436	Normal	0.3
723	Tumor	0.3
432	Normal	0.3
328	Normal	0.3
392	Normal	0.2
433	Tumor	0.2
411	Tumor	0.2
481	Tumor	0.2
445	Tumor	0.2
462	Normal	0.2
864	Normal	0.2
351	Tumor	0.2
434	Normal	0.2
221	Tumor	0.2
466	Normal	0.2
851	Tumor	0.2
981	Tumor	0.2
526	Normal	0.2
671	Tumor	0.2
258	Normal	0.2
873	Tumor	0.2
443	Tumor	0.2
1015	Tumor	0.2
314	Normal	0.2
557	Tumor	0.2
823	Tumor	0.2
743	Tumor	0.2
186	Normal	0.2
423	Tumor	0.2
665	Tumor	0.2
572	Normal	0.2
132	Normal	0.2
312	Normal	0.1
135	Tumor	0.1
1046	Normal	0.1
535	Tumor	0.1
616	Normal	0.1
451	Tumor	0.1
142	Normal	0.1
484	Normal	0.1
366	Normal	0.1
396	Normal	0.1
573	Tumor	0.1
824	Normal	0.1
911	Tumor	0.1
136	Normal	0.1
685	Tumor	0.1
921	Tumor	0.1
285	Tumor	0.1
271	Tumor	0.1
954	Normal	0.1
172	Normal	0.1
664	Normal	0.1
1014	Normal	0.1
313	Tumor	0.1
715	Tumor	0.1
746	Normal	0.1
222	Normal	0.1
672	Normal	0.1
278	Normal	0.1
463	Tumor	0.1
923	Tumor	0.1
412	Normal	0.1
862	Normal	0.1
113	Tumor	0.1
342	Normal	0.1
257	Tumor	0.1
1027	Tumor	0.1
298	Normal	0.1
185	Tumor	0.1
128	Normal	0.1
446	Normal	0.1
213	Tumor	0.1
425	Tumor	0.0
868	Normal	0.0
218	Normal	0.0
937	Tumor	0.0
1026	Normal	0.0
191	Tumor	0.0
944	Normal	0.0
874	Normal	0.0
297	Tumor	0.0
114	Normal	0.0
138	Normal	0.0
866	Normal	0.0
357	Tumor	0.0
1032	Normal	0.0
618	Normal	0.0
515	Tumor	0.0
818	Normal	0.0
554	Normal	0.0
922	Normal	0.0
714	Normal	0.0
214	Normal	0.0
228	Normal	0.0
112	Tumor	0.0
124	Normal	0.0
146	Normal	0.0
332	Normal	0.0
111	Normal	0.0
756	Normal	0.0
456	Normal	0.0
628	Normal	0.0
686	Normal	0.0
724	Normal	0.0
955	Tumor	0.0
162	Normal	0.0
126	Normal	0.0
422	Normal	0.0
474	Normal	0.0
568	Normal	0.0
852	Normal	0.0
426	Normal	0.0
538	Normal	0.0
232	Normal	0.0
786	Normal	0.0
431	Tumor	0.0
728	Normal	0.0
388	Normal	0.0
286	Normal	0.0
956	Normal	0.0
518	Normal	0.0
387	Tumor	0.0
137	Tumor	0.0
341	Tumor	0.0
376	Normal	0.0
448	Normal	0.0
331	Tumor	-0.1
272	Normal	-0.1
966	Normal	-0.1
738	Normal	-0.1
464	Normal	-0.1
195	Tumor	-0.1
861	Tumor	-0.1
951	Tumor	-0.1
354	Normal	-0.1
563	Tumor	-0.1
963	Tumor	-0.1
642	Normal	-0.1
141	Tumor	-0.1
977	Tumor	-0.1
514	Normal	-0.1
217	Tumor	-0.1
914	Normal	-0.1
698	Normal	-0.1
196	Normal	-0.1
261	Tumor	-0.1
574	Normal	-0.1
858	Normal	-0.1
472	Normal	-0.1
327	Tumor	-0.1
223	Tumor	-0.1
492	Normal	-0.1
1021	Tumor	-0.1
534	Normal	-0.1
635	Tumor	-0.1
356	Normal	-0.1
524	Normal	-0.1
352	Normal	-0.1
636	Normal	-0.1
427	Tumor	-0.1
918	Normal	-0.1
385	Tumor	-0.1
716	Normal	-0.1
943	Tumor	-0.1
187	Tumor	-0.1
952	Normal	-0.1
976	Normal	-0.1
131	Tumor	-0.1
362	Normal	-0.1
778	Normal	-0.1
283	Tumor	-0.1
817	Tumor	-0.1
558	Normal	-0.1
696	Normal	-0.1
413	Tumor	-0.1
567	Tumor	-0.1
953	Tumor	-0.1
938	Normal	-0.2
461	Tumor	-0.2
444	Normal	-0.2
968	Normal	-0.2
982	Normal	-0.2
148	Normal	-0.2
268	Normal	-0.2
277	Tumor	-0.2
1016	Normal	-0.2
262	Normal	-0.2
815	Tumor	-0.2
877	Tumor	-0.2
353	Tumor	-0.2
487	Tumor	-0.2
553	Tumor	-0.2
123	Tumor	-0.2
424	Normal	-0.2
744	Normal	-0.2
546	Normal	-0.2
494	Normal	-0.2
662	Normal	-0.2
125	Tumor	-0.2
916	Normal	-0.2
383	Tumor	-0.2
384	Normal	-0.2
666	Normal	-0.2
386	Normal	-0.2
878	Normal	-0.2
414	Normal	-0.2
344	Normal	-0.2
455	Tumor	-0.2
533	Tumor	-0.2
497	Tumor	-0.2
428	Normal	-0.2
917	Tumor	-0.2
1044	Normal	-0.2
161	Tumor	-0.2
188	Normal	-0.2
964	Normal	-0.2
663	Tumor	-0.2
882	Normal	-0.2
224	Normal	-0.2
857	Tumor	-0.2
488	Normal	-0.2
482	Normal	-0.2
284	Normal	-0.2
368	Normal	-0.2
355	Tumor	-0.2
192	Normal	-0.2
975	Tumor	-0.2
1022	Normal	-0.2
867	Tumor	-0.3
722	Normal	-0.3
516	Normal	-0.3
721	Tumor	-0.3
364	Normal	-0.3
737	Tumor	-0.3
416	Normal	-0.3
395	Tumor	-0.3
958	Normal	-0.3
528	Normal	-0.3
1028	Normal	-0.3
881	Tumor	-0.3
777	Tumor	-0.3
311	Tumor	-0.3
913	Tumor	-0.3
813	Tumor	-0.3
375	Tumor	-0.3
467	Tumor	-0.3
816	Normal	-0.3
884	Normal	-0.3
212	Normal	-0.3
978	Normal	-0.4
421	Tumor	-0.4
697	Tumor	-0.4
478	Normal	-0.4
984	Normal	-0.4
536	Normal	-0.4
471	Tumor	-0.4
1042	Normal	-0.4
498	Normal	-0.4
415	Tumor	-0.4
493	Tumor	-0.4
863	Tumor	-0.4
814	Normal	-0.4
523	Tumor	-0.5
912	Normal	-0.5
617	Tumor	-0.5
211	Tumor	-0.5
527	Tumor	-0.5
447	Tumor	-0.5
343	Tumor	-0.6
545	Tumor	-0.9
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA060643
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Carcinoma, Hepatocellular, NOS
Cholangiocarcinoma