MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:81.5 nTPM
GTEx:3.2 nTPM
FANTOM5:5.2 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:38.8 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 75.4
2586 Male, age 75, left hemisphere 129.4
2219 Male, age 76, both hemispheres 91.2
2828 Female, age 72, unknown 81.5
1827 Male, age 72, unknown 78.2
2411 Female, age 72, unknown 69.6
2666 Male, age 74, left hemisphere 69.3
1833 Male, age 53, unknown 63.1
1830 Male, age 51, unknown 59.1
1870 Female, age 42, unknown 58.8
2019 Male, age 18, unknown 54.3
Dorsal raphe nucleus
nTPM: 64.3
2047 Male, age 72, unknown 69.0
2750 Male, age 76, both hemispheres 63.9
1828 Male, age 53, unknown 63.3
2016 Female, age 72, unknown 62.8
2298 Female, age 72, unknown 62.7
Inferior colliculus
nTPM: 61.3
2849 Male, age 72, unknown 63.6
1848 Female, age 42, unknown 63.0
2097 Female, age 72, unknown 60.2
1890 Male, age 53, unknown 58.6
Median raphe nucleus
nTPM: 76.6
2220 Male, age 76, midline 76.6
Periaquaductal grey, anterior
nTPM: 76.7
2502 Female, age 75, unknown 79.6
1795 Male, age 51, unknown 76.1
1947 Male, age 18, unknown 74.4
Periaquaductal grey, dorsal
nTPM: 60.6
1840 Male, age 53, unknown 67.1
2464 Female, age 72, unknown 63.0
1831 Male, age 72, unknown 60.6
2850 Male, age 76, both hemispheres 51.8
Periaquaductal grey, lateral
nTPM: 55.4
2053 Male, age 18, unknown 68.5
2140 Male, age 76, both hemispheres 51.9
2272 Male, age 74, both hemispheres 45.7
Pretectal area
nTPM: 70.2
1816 Male, age 51, unknown 81.7
2407 Male, age 75, both hemispheres 81.0
2825 Male, age 18, unknown 76.6
1815 Male, age 53, unknown 75.5
1944 Female, age 72, unknown 75.5
2007 Male, age 72, unknown 75.0
1817 Female, age 42, unknown 73.7
2667 Female, age 75, unknown 72.1
2224 Female, age 72, unknown 56.8
2316 Male, age 76, right hemisphere 56.8
2273 Male, age 74, both hemispheres 47.6
Red nucleus
nTPM: 59.8
2584 Male, age 75, left hemisphere 95.6
2588 Male, age 74, left hemisphere 73.3
2227 Male, age 72, unknown 59.1
2769 Male, age 72, unknown 59.0
1954 Female, age 42, unknown 58.1
1821 Female, age 72, unknown 57.3
2785 Male, age 18, unknown 57.2
2503 Female, age 72, unknown 56.9
1904 Male, age 53, unknown 56.3
1865 Male, age 51, unknown 53.3
2823 Male, age 76, right hemisphere 47.2
2725 Female, age 75, unknown 44.4
Substantia nigra
nTPM: 81.5
2665 Male, age 74, both hemispheres 106.9
1941 Male, age 53, unknown 89.3
1916 Female, age 42, unknown 87.2
2583 Male, age 75, right hemisphere 83.7
1851 Male, age 51, unknown 82.6
2241 Male, age 72, unknown 77.6
2590 Female, age 75, unknown 75.8
2699 Male, age 18, unknown 75.8
1889 Female, age 72, unknown 71.9
2409 Female, age 72, unknown 64.0
Superior colliculus
nTPM: 71.9
2664 Male, age 75, both hemispheres 108.1
2668 Female, age 75, unknown 91.2
2087 Female, age 72, unknown 77.2
2261 Male, age 18, unknown 76.6
1796 Male, age 53, unknown 71.5
1839 Male, age 51, unknown 68.0
2587 Male, age 74, left hemisphere 58.9
1913 Female, age 42, unknown 58.2
1995 Male, age 72, unknown 55.8
1895 Male, age 76, right hemisphere 53.2
Ventral tegmental area
nTPM: 72.3
1942 Male, age 51, unknown 84.4
2218 Male, age 76, both hemispheres 75.7
1915 Female, age 42, unknown 73.2
2410 Female, age 72, unknown 70.5
2021 Male, age 53, unknown 67.8
2223 Female, age 72, unknown 62.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 6.5
Min nTPM: 0.1
Std nTPM: 1.3
Median nTPM: 3.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 6.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 6.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 6.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 5.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 5.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 5.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 5.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 5.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 5.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.2
FF:10158-103A5 76 years, female 5.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.9
Samples: 4

Max nTPM: 26.7
Min nTPM: 14.6
Sample A Female 22.5
Sample B Female 14.6
Sample C Male 26.7
Sample D Male 15.7
Midbrain
nTPM: 26.4
Samples: 4

Max nTPM: 38.7
Min nTPM: 12.5
Sample A Female 12.5
Sample B Female 18.6
Sample C Male 35.6
Sample D Male 38.7
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 20.5
Min nTPM: 14.7
Sample B Female 18.6
Sample C Male 20.5
Sample D Male 14.7
Superior colliculi
nTPM: 27.5
Samples: 4

Max nTPM: 33.5
Min nTPM: 18.0
Sample A Female 27.3
Sample B Female 18.0
Sample C Male 31.2
Sample D Male 33.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.8
Samples: 4

Max nTPM: 41.0
Min nTPM: 35.2
Sample A Male 35.2
Sample B Male 38.5
Sample C Female 41.0
Sample D Female 40.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
70545919 Antisense, RP_050623_03_B11, Mouse strain C57BL/6J (56 days, male) 4.0

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