We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOL12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
64.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
44.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
37.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
35.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
31.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
30.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
27.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
19.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
18.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
16.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
10.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NOL12 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
3.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
714
Normal
1.8
865
Tumor
1.7
722
Normal
1.7
716
Normal
1.5
661
Tumor
1.5
696
Normal
1.3
537
Tumor
1.2
385
Tumor
1.2
473
Tumor
1.2
686
Normal
1.2
331
Tumor
1.1
743
Tumor
1.1
1021
Tumor
1.1
1031
Tumor
1.1
923
Tumor
1.1
671
Tumor
1.0
965
Tumor
1.0
724
Normal
1.0
1041
Tumor
1.0
665
Tumor
1.0
951
Tumor
0.9
395
Tumor
0.9
983
Tumor
0.9
647
Tumor
0.9
411
Tumor
0.9
663
Tumor
0.8
413
Tumor
0.8
363
Tumor
0.8
737
Tumor
0.8
387
Tumor
0.7
187
Tumor
0.7
147
Tumor
0.7
545
Tumor
0.7
351
Tumor
0.7
815
Tumor
0.7
925
Tumor
0.7
123
Tumor
0.7
367
Tumor
0.7
355
Tumor
0.6
964
Normal
0.6
777
Tumor
0.6
391
Tumor
0.6
1027
Tumor
0.6
383
Tumor
0.6
227
Tumor
0.6
427
Tumor
0.6
443
Tumor
0.6
851
Tumor
0.6
267
Tumor
0.6
131
Tumor
0.6
921
Tumor
0.5
217
Tumor
0.5
497
Tumor
0.5
967
Tumor
0.5
467
Tumor
0.5
357
Tumor
0.5
361
Tumor
0.5
483
Tumor
0.5
223
Tumor
0.5
221
Tumor
0.5
1025
Tumor
0.5
423
Tumor
0.5
313
Tumor
0.5
943
Tumor
0.5
823
Tumor
0.4
721
Tumor
0.4
917
Tumor
0.4
171
Tumor
0.4
977
Tumor
0.4
343
Tumor
0.4
298
Normal
0.4
817
Tumor
0.4
311
Tumor
0.4
533
Tumor
0.4
285
Tumor
0.4
493
Tumor
0.4
191
Tumor
0.4
224
Normal
0.4
487
Tumor
0.4
471
Tumor
0.4
953
Tumor
0.4
428
Normal
0.4
957
Tumor
0.3
278
Normal
0.3
861
Tumor
0.3
424
Normal
0.3
185
Tumor
0.3
213
Tumor
0.3
341
Tumor
0.3
277
Tumor
0.3
755
Tumor
0.3
211
Tumor
0.3
814
Normal
0.3
135
Tumor
0.3
553
Tumor
0.3
426
Normal
0.2
283
Tumor
0.2
314
Normal
0.2
414
Normal
0.2
161
Tumor
0.2
937
Tumor
0.2
813
Tumor
0.2
452
Normal
0.2
422
Normal
0.2
353
Tumor
0.2
727
Tumor
0.2
857
Tumor
0.2
873
Tumor
0.2
1013
Tumor
0.2
975
Tumor
0.2
745
Tumor
0.2
818
Normal
0.2
141
Tumor
0.2
327
Tumor
0.1
312
Normal
0.1
425
Tumor
0.1
375
Tumor
0.1
955
Tumor
0.1
113
Tumor
0.1
463
Tumor
0.1
527
Tumor
0.1
852
Normal
0.1
455
Tumor
0.1
451
Tumor
0.1
332
Normal
0.1
824
Normal
0.1
491
Tumor
0.1
145
Tumor
0.1
978
Normal
0.1
393
Tumor
0.0
713
Tumor
0.0
297
Tumor
0.0
195
Tumor
0.0
421
Tumor
0.0
916
Normal
0.0
271
Tumor
0.0
261
Tumor
0.0
944
Normal
0.0
127
Tumor
0.0
228
Normal
0.0
785
Tumor
N/A
433
Tumor
0.0
388
Normal
0.0
816
Normal
0.0
464
Normal
0.0
954
Normal
0.0
858
Normal
0.0
286
Normal
0.0
415
Tumor
0.0
866
Normal
0.0
188
Normal
0.0
1015
Tumor
-0.1
484
Normal
-0.1
494
Normal
-0.1
284
Normal
-0.1
1014
Normal
-0.1
232
Normal
-0.1
952
Normal
-0.1
112
Tumor
-0.1
984
Normal
-0.1
477
Tumor
-0.1
492
Normal
-0.1
915
Tumor
-0.1
212
Normal
-0.1
466
Normal
-0.1
148
Normal
-0.1
461
Tumor
-0.1
344
Normal
-0.1
186
Normal
-0.1
982
Normal
-0.1
918
Normal
-0.1
966
Normal
-0.1
546
Normal
-0.1
352
Normal
-0.1
394
Normal
-0.1
384
Normal
-0.2
963
Tumor
-0.2
488
Normal
-0.2
396
Normal
-0.2
392
Normal
-0.2
257
Tumor
-0.2
231
Tumor
-0.2
132
Normal
-0.2
534
Normal
-0.2
498
Normal
-0.2
664
Normal
-0.2
125
Tumor
-0.2
456
Normal
-0.2
262
Normal
-0.2
1028
Normal
-0.2
436
Normal
-0.2
938
Normal
-0.2
924
Normal
-0.2
268
Normal
-0.2
138
Normal
-0.2
867
Tumor
-0.3
136
Normal
-0.3
1026
Normal
-0.3
1016
Normal
-0.3
976
Normal
-0.3
386
Normal
-0.3
142
Normal
-0.3
445
Tumor
-0.3
162
Normal
-0.3
478
Normal
-0.3
956
Normal
-0.3
358
Normal
-0.3
172
Normal
-0.3
354
Normal
-0.3
728
Normal
-0.3
446
Normal
-0.3
472
Normal
-0.3
444
Normal
-0.3
481
Tumor
-0.3
864
Normal
-0.3
482
Normal
-0.3
146
Normal
-0.3
465
Tumor
-0.3
786
Normal
-0.4
412
Normal
-0.4
538
Normal
-0.4
137
Tumor
-0.4
1042
Normal
-0.4
342
Normal
-0.4
434
Normal
-0.4
462
Normal
-0.4
672
Normal
-0.4
756
Normal
-0.4
1022
Normal
-0.4
528
Normal
-0.4
356
Normal
-0.4
742
Normal
-0.4
258
Normal
-0.4
376
Normal
-0.4
474
Normal
-0.4
192
Normal
-0.4
874
Normal
-0.4
926
Normal
-0.4
981
Tumor
-0.4
468
Normal
-0.4
272
Normal
-0.4
365
Tumor
-0.4
778
Normal
-0.4
362
Normal
-0.4
746
Normal
-0.4
554
Normal
-0.4
922
Normal
-0.4
111
Normal
-0.4
863
Tumor
-0.5
126
Normal
-0.5
128
Normal
-0.5
114
Normal
-0.5
432
Normal
-0.5
685
Tumor
-0.5
368
Normal
-0.5
723
Tumor
-0.5
868
Normal
-0.5
218
Normal
-0.5
862
Normal
-0.5
662
Normal
-0.5
431
Tumor
-0.5
435
Tumor
-0.5
328
Normal
-0.5
744
Normal
-0.5
364
Normal
-0.5
416
Normal
-0.5
196
Normal
-0.6
222
Normal
-0.6
124
Normal
-0.6
695
Tumor
-0.6
715
Tumor
-0.6
666
Normal
-0.6
1032
Normal
-0.6
366
Normal
-0.6
648
Normal
-0.7
738
Normal
-0.7
214
Normal
-0.7
741
Tumor
-0.7
968
Normal
-1.0
958
Normal
-1.0
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
448
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
