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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAF9 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
154.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
103.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
102.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
101.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
100.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
90.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
89.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
86.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
85.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
85.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
84.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
84.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
84.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
82.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
80.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
79.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
79.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
77.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
73.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
73.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
73.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
71.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
70.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
69.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
69.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
68.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
67.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
66.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
65.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
63.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
62.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
62.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
61.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
61.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
60.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
60.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
60.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
59.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
58.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
58.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
57.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
57.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
56.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
55.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
55.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
54.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
54.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
54.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
53.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
52.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
51.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
51.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
51.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
51.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
50.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
50.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
50.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
50.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
49.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
49.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
48.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
48.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
48.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
48.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
46.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
46.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
46.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
46.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
45.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
45.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
45.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
45.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
45.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
44.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
44.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
44.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
44.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
43.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
43.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
43.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
43.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
43.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
42.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
42.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
42.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
42.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
41.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
41.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
40.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
40.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
40.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
40.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
40.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
40.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
39.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
39.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
39.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
39.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
39.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
38.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
38.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
37.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
37.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
37.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
37.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
36.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
35.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
35.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
34.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
34.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
34.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
34.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
33.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
33.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
33.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
32.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
31.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
31.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
31.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
30.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
30.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
30.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
30.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
29.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
29.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
28.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
28.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
28.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
27.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
27.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
27.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
25.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
24.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
24.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
24.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
24.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
24.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
24.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
23.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
22.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
20.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
20.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
19.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
19.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
18.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
18.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
17.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
14.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAF9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.0
Number of samples
231
Samples
Sample
Description
TPM
DO23545
0 years, male, NA, stage:2, dead, 570 days
172.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
129.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
117.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
110.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
102.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
102.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
99.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
96.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
94.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
87.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
84.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
83.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
82.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
81.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
81.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
80.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
79.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
78.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
78.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
78.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
77.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
77.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
77.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
76.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
76.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
74.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
73.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
73.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
72.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
71.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
71.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
70.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
70.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
70.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
69.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
68.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
67.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
66.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
64.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
64.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
63.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
63.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
63.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
62.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
62.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
61.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
61.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
59.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
58.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
58.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
57.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
57.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
56.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
55.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
55.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
54.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
54.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
54.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
54.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
54.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
53.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
53.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
53.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
53.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
53.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
53.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
52.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
51.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
50.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
50.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
50.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
50.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
49.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
48.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
48.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
47.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
47.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
47.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
47.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
47.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
46.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
46.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
45.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
45.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
45.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
44.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
44.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
44.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
44.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
43.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
43.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
42.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
42.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
42.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
42.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
42.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
42.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
41.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
41.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
40.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
40.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
40.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
39.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
36.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
36.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
35.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
35.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
31.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
29.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
29.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
29.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
25.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
25.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
24.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
23.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
465
Tumor
0.7
517
Tumor
0.7
313
Tumor
0.7
331
Tumor
0.6
743
Tumor
0.6
463
Tumor
0.6
271
Tumor
0.6
877
Tumor
0.6
635
Tumor
0.6
277
Tumor
0.6
425
Tumor
0.5
695
Tumor
0.5
112
Tumor
0.5
523
Tumor
0.5
497
Tumor
0.5
921
Tumor
0.5
815
Tumor
0.5
951
Tumor
0.5
351
Tumor
0.5
957
Tumor
0.4
965
Tumor
0.4
647
Tumor
0.4
1013
Tumor
0.4
443
Tumor
0.4
535
Tumor
0.4
267
Tumor
0.4
171
Tumor
0.4
131
Tumor
0.4
923
Tumor
0.4
357
Tumor
0.4
977
Tumor
0.4
227
Tumor
0.4
435
Tumor
0.4
967
Tumor
0.3
953
Tumor
0.3
355
Tumor
0.3
685
Tumor
0.3
221
Tumor
0.3
161
Tumor
0.3
367
Tumor
0.3
727
Tumor
0.3
483
Tumor
0.3
423
Tumor
0.3
127
Tumor
0.3
411
Tumor
0.3
883
Tumor
0.3
817
Tumor
0.3
341
Tumor
0.3
361
Tumor
0.3
125
Tumor
0.3
297
Tumor
0.3
1031
Tumor
0.3
545
Tumor
0.3
427
Tumor
0.3
665
Tumor
0.3
737
Tumor
0.3
123
Tumor
0.3
283
Tumor
0.3
937
Tumor
0.3
661
Tumor
0.2
431
Tumor
0.2
213
Tumor
0.2
533
Tumor
0.2
983
Tumor
0.2
285
Tumor
0.2
873
Tumor
0.2
537
Tumor
0.2
433
Tumor
0.2
824
Normal
0.2
1027
Tumor
0.2
185
Tumor
0.2
813
Tumor
0.2
147
Tumor
0.2
615
Tumor
0.2
477
Tumor
0.2
814
Normal
0.2
513
Tumor
0.2
141
Tumor
0.2
1043
Tumor
0.2
385
Tumor
0.2
981
Tumor
0.2
187
Tumor
0.2
851
Tumor
0.2
913
Tumor
0.2
881
Tumor
0.2
571
Tumor
0.2
257
Tumor
0.2
211
Tumor
0.2
975
Tumor
0.2
567
Tumor
0.2
447
Tumor
0.2
777
Tumor
0.2
925
Tumor
0.2
145
Tumor
0.2
943
Tumor
0.2
391
Tumor
0.2
573
Tumor
0.2
146
Normal
0.2
671
Tumor
0.2
413
Tumor
0.2
383
Tumor
0.2
126
Normal
0.1
963
Tumor
0.1
375
Tumor
0.1
445
Tumor
0.1
132
Normal
0.1
232
Normal
0.1
393
Tumor
0.1
858
Normal
0.1
493
Tumor
0.1
487
Tumor
0.1
136
Normal
0.1
1021
Tumor
0.1
387
Tumor
0.1
525
Tumor
0.1
135
Tumor
0.1
314
Normal
0.1
641
Tumor
0.1
464
Normal
0.1
982
Normal
0.1
186
Normal
0.1
756
Normal
0.1
755
Tumor
0.1
451
Tumor
0.1
217
Tumor
0.1
1014
Normal
0.1
261
Tumor
0.1
446
Normal
0.1
491
Tumor
0.1
1016
Normal
0.1
467
Tumor
0.1
384
Normal
0.1
343
Tumor
0.1
724
Normal
0.1
863
Tumor
0.1
111
Normal
0.1
231
Tumor
0.1
741
Tumor
0.1
365
Tumor
0.1
524
Normal
0.1
436
Normal
0.1
172
Normal
0.1
865
Tumor
0.1
984
Normal
0.1
162
Normal
0.1
368
Normal
0.1
857
Tumor
0.1
376
Normal
0.1
818
Normal
0.1
415
Tumor
0.1
444
Normal
0.1
432
Normal
0.1
188
Normal
0.0
258
Normal
0.0
362
Normal
0.0
148
Normal
0.0
515
Tumor
0.0
663
Tumor
0.0
867
Tumor
0.0
823
Tumor
0.0
113
Tumor
0.0
268
Normal
0.0
482
Normal
0.0
917
Tumor
0.0
455
Tumor
0.0
392
Normal
0.0
553
Tumor
0.0
1041
Tumor
0.0
452
Normal
0.0
327
Tumor
0.0
526
Normal
0.0
861
Tumor
0.0
298
Normal
0.0
456
Normal
0.0
964
Normal
0.0
424
Normal
0.0
142
Normal
0.0
138
Normal
N/A
516
Normal
0.0
557
Tumor
0.0
468
Normal
0.0
534
Normal
0.0
554
Normal
0.0
666
Normal
0.0
664
Normal
0.0
332
Normal
0.0
527
Tumor
0.0
366
Normal
0.0
1045
Tumor
0.0
328
Normal
0.0
627
Tumor
0.0
976
Normal
0.0
745
Tumor
0.0
272
Normal
0.0
538
Normal
0.0
342
Normal
0.0
352
Normal
0.0
648
Normal
0.0
124
Normal
0.0
1025
Tumor
0.0
114
Normal
0.0
617
Tumor
0.0
466
Normal
0.0
137
Tumor
0.0
786
Normal
0.0
546
Normal
0.0
426
Normal
0.0
278
Normal
0.0
572
Normal
0.0
481
Tumor
-0.1
882
Normal
-0.1
672
Normal
-0.1
744
Normal
-0.1
884
Normal
-0.1
364
Normal
-0.1
286
Normal
-0.1
518
Normal
-0.1
954
Normal
-0.1
924
Normal
-0.1
912
Normal
-0.1
412
Normal
-0.1
878
Normal
-0.1
816
Normal
-0.1
958
Normal
-0.1
191
Tumor
-0.1
696
Normal
-0.1
421
Tumor
-0.1
484
Normal
-0.1
224
Normal
-0.1
1015
Tumor
-0.1
498
Normal
-0.1
1026
Normal
-0.1
428
Normal
-0.1
915
Tumor
-0.1
778
Normal
-0.1
852
Normal
-0.1
636
Normal
-0.1
358
Normal
-0.1
473
Tumor
-0.1
262
Normal
-0.1
978
Normal
-0.1
1032
Normal
-0.1
394
Normal
-0.1
395
Tumor
-0.1
698
Normal
-0.1
284
Normal
-0.1
536
Normal
-0.1
713
Tumor
-0.1
363
Tumor
-0.1
222
Normal
-0.1
528
Normal
-0.1
461
Tumor
-0.1
618
Normal
-0.1
944
Normal
-0.1
434
Normal
-0.1
922
Normal
-0.1
616
Normal
-0.1
874
Normal
-0.1
642
Normal
-0.1
926
Normal
-0.1
1046
Normal
-0.1
1028
Normal
-0.1
353
Tumor
-0.1
916
Normal
-0.1
955
Tumor
-0.1
715
Tumor
-0.1
471
Tumor
-0.1
574
Normal
-0.1
716
Normal
-0.1
228
Normal
-0.1
494
Normal
-0.1
312
Normal
-0.1
396
Normal
-0.1
1042
Normal
-0.1
1022
Normal
-0.1
563
Tumor
-0.1
952
Normal
-0.2
723
Tumor
-0.2
746
Normal
-0.2
414
Normal
-0.2
918
Normal
-0.2
488
Normal
-0.2
568
Normal
-0.2
492
Normal
-0.2
212
Normal
-0.2
192
Normal
-0.2
422
Normal
-0.2
868
Normal
-0.2
662
Normal
-0.2
862
Normal
-0.2
938
Normal
-0.2
864
Normal
-0.2
218
Normal
-0.2
721
Tumor
-0.2
448
Normal
-0.2
514
Normal
-0.2
128
Normal
-0.2
311
Tumor
-0.2
344
Normal
-0.2
462
Normal
-0.2
686
Normal
-0.2
196
Normal
-0.2
866
Normal
-0.2
356
Normal
-0.2
714
Normal
-0.2
722
Normal
-0.2
785
Tumor
-0.2
911
Tumor
-0.2
386
Normal
-0.2
474
Normal
-0.2
195
Tumor
-0.2
223
Tumor
-0.2
968
Normal
-0.2
354
Normal
-0.2
956
Normal
-0.3
628
Normal
-0.3
564
Normal
-0.3
966
Normal
-0.3
742
Normal
-0.3
558
Normal
-0.3
728
Normal
-0.3
478
Normal
-0.3
388
Normal
-0.3
214
Normal
-0.3
472
Normal
-0.3
1044
Normal
-0.3
738
Normal
-0.3
416
Normal
-0.4
697
Tumor
-0.4
914
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
