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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POM121C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
22.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
21.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POM121C is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
4.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
1.0
221
Tumor
1.0
977
Tumor
1.0
131
Tumor
1.0
965
Tumor
0.9
743
Tumor
0.9
425
Tumor
0.9
285
Tumor
0.8
123
Tumor
0.8
271
Tumor
0.8
737
Tumor
0.7
351
Tumor
0.7
817
Tumor
0.7
431
Tumor
0.7
171
Tumor
0.7
1031
Tumor
0.7
715
Tumor
0.7
957
Tumor
0.7
231
Tumor
0.7
1021
Tumor
0.6
211
Tumor
0.6
671
Tumor
0.6
685
Tumor
0.6
1013
Tumor
0.6
535
Tumor
0.6
537
Tumor
0.6
483
Tumor
0.6
331
Tumor
0.5
647
Tumor
0.5
573
Tumor
0.5
983
Tumor
0.5
921
Tumor
0.5
724
Normal
0.5
533
Tumor
0.5
661
Tumor
0.5
455
Tumor
0.5
443
Tumor
0.5
283
Tumor
0.5
473
Tumor
0.4
641
Tumor
0.4
911
Tumor
0.4
975
Tumor
0.4
815
Tumor
0.4
777
Tumor
0.4
213
Tumor
0.4
881
Tumor
0.4
553
Tumor
0.4
883
Tumor
0.4
741
Tumor
0.4
951
Tumor
0.4
267
Tumor
0.4
967
Tumor
0.4
413
Tumor
0.4
727
Tumor
0.4
813
Tumor
0.4
517
Tumor
0.4
227
Tumor
0.4
447
Tumor
0.4
1015
Tumor
0.4
785
Tumor
0.4
217
Tumor
0.4
1043
Tumor
0.4
463
Tumor
0.4
343
Tumor
0.3
387
Tumor
0.3
385
Tumor
0.3
341
Tumor
0.3
563
Tumor
0.3
451
Tumor
0.3
433
Tumor
0.3
311
Tumor
0.3
545
Tumor
0.3
187
Tumor
0.3
1041
Tumor
0.3
814
Normal
0.3
363
Tumor
0.3
223
Tumor
0.3
367
Tumor
0.3
411
Tumor
0.3
557
Tumor
0.3
261
Tumor
0.3
877
Tumor
0.3
297
Tumor
0.3
481
Tumor
0.3
135
Tumor
0.3
391
Tumor
0.3
467
Tumor
0.3
923
Tumor
0.3
695
Tumor
0.3
672
Normal
0.3
191
Tumor
0.3
375
Tumor
0.3
353
Tumor
0.3
195
Tumor
0.3
937
Tumor
0.2
1025
Tumor
0.2
527
Tumor
0.2
663
Tumor
0.2
497
Tumor
0.2
865
Tumor
0.2
915
Tumor
0.2
913
Tumor
0.2
112
Tumor
0.2
884
Normal
0.2
395
Tumor
0.2
435
Tumor
0.2
925
Tumor
0.2
523
Tumor
0.2
943
Tumor
0.2
867
Tumor
0.2
113
Tumor
0.2
851
Tumor
0.2
421
Tumor
0.2
277
Tumor
0.2
127
Tumor
0.2
357
Tumor
0.2
697
Tumor
0.2
745
Tumor
0.1
445
Tumor
0.1
365
Tumor
0.1
471
Tumor
0.1
866
Normal
0.1
635
Tumor
0.1
384
Normal
0.1
487
Tumor
0.1
224
Normal
0.1
917
Tumor
0.1
355
Tumor
0.1
383
Tumor
0.1
721
Tumor
0.1
161
Tumor
0.1
427
Tumor
0.1
515
Tumor
0.1
493
Tumor
0.1
912
Normal
0.1
857
Tumor
0.1
444
Normal
0.1
477
Tumor
0.1
786
Normal
0.1
192
Normal
0.1
228
Normal
0.1
963
Tumor
0.1
284
Normal
0.1
327
Tumor
0.1
525
Tumor
0.1
478
Normal
0.1
137
Tumor
0.1
984
Normal
0.1
465
Tumor
0.1
744
Normal
0.0
257
Tumor
0.0
1022
Normal
0.0
953
Tumor
0.0
816
Normal
0.0
615
Tumor
0.0
461
Tumor
0.0
396
Normal
0.0
571
Tumor
0.0
352
Normal
0.0
982
Normal
0.0
147
Tumor
0.0
824
Normal
0.0
755
Tumor
0.0
756
Normal
0.0
746
Normal
0.0
498
Normal
0.0
482
Normal
0.0
955
Tumor
0.0
778
Normal
0.0
666
Normal
0.0
536
Normal
0.0
376
Normal
0.0
686
Normal
0.0
882
Normal
0.0
368
Normal
0.0
361
Tumor
0.0
524
Normal
0.0
366
Normal
0.0
954
Normal
0.0
567
Tumor
0.0
513
Tumor
0.0
617
Tumor
0.0
978
Normal
-0.1
716
Normal
-0.1
472
Normal
-0.1
358
Normal
-0.1
491
Tumor
-0.1
462
Normal
-0.1
1045
Tumor
-0.1
873
Tumor
-0.1
392
Normal
-0.1
344
Normal
-0.1
393
Tumor
-0.1
728
Normal
-0.1
858
Normal
-0.1
952
Normal
-0.1
956
Normal
-0.1
1044
Normal
-0.1
1028
Normal
-0.1
354
Normal
-0.1
852
Normal
-0.1
868
Normal
-0.1
146
Normal
-0.1
944
Normal
-0.1
698
Normal
-0.1
918
Normal
-0.1
394
Normal
-0.1
914
Normal
-0.1
415
Tumor
-0.1
313
Tumor
-0.1
114
Normal
-0.1
723
Tumor
-0.1
286
Normal
-0.1
1042
Normal
-0.1
212
Normal
-0.1
742
Normal
-0.1
1014
Normal
-0.1
864
Normal
-0.1
456
Normal
-0.1
662
Normal
-0.1
222
Normal
-0.1
388
Normal
-0.1
818
Normal
-0.2
722
Normal
-0.2
648
Normal
-0.2
488
Normal
-0.2
538
Normal
-0.2
1046
Normal
-0.2
664
Normal
-0.2
448
Normal
-0.2
1027
Tumor
-0.2
714
Normal
-0.2
696
Normal
-0.2
386
Normal
-0.2
124
Normal
-0.2
1016
Normal
-0.2
138
Normal
-0.2
1032
Normal
-0.2
874
Normal
-0.2
534
Normal
-0.2
938
Normal
-0.2
185
Tumor
-0.2
128
Normal
-0.2
342
Normal
-0.2
328
Normal
-0.2
466
Normal
-0.2
878
Normal
-0.2
964
Normal
-0.2
126
Normal
-0.2
862
Normal
-0.2
546
Normal
-0.2
528
Normal
-0.2
452
Normal
-0.2
863
Tumor
-0.2
434
Normal
-0.2
125
Tumor
-0.2
924
Normal
-0.2
446
Normal
-0.2
218
Normal
-0.2
214
Normal
-0.2
494
Normal
-0.2
514
Normal
-0.2
188
Normal
-0.2
141
Tumor
-0.2
474
Normal
-0.2
436
Normal
-0.2
981
Tumor
-0.2
464
Normal
-0.2
111
Normal
-0.3
713
Tumor
-0.3
823
Tumor
-0.3
861
Tumor
-0.3
468
Normal
-0.3
572
Normal
-0.3
484
Normal
-0.3
148
Normal
-0.3
356
Normal
-0.3
558
Normal
-0.3
738
Normal
-0.3
916
Normal
-0.3
364
Normal
-0.3
642
Normal
-0.3
516
Normal
-0.3
926
Normal
-0.3
554
Normal
-0.3
636
Normal
-0.3
145
Tumor
-0.3
268
Normal
-0.3
564
Normal
-0.3
423
Tumor
-0.3
627
Tumor
-0.3
1026
Normal
-0.3
416
Normal
-0.3
922
Normal
-0.3
518
Normal
-0.3
568
Normal
-0.3
968
Normal
-0.3
628
Normal
-0.3
492
Normal
-0.3
526
Normal
-0.3
196
Normal
-0.3
362
Normal
-0.3
412
Normal
-0.3
312
Normal
-0.3
262
Normal
-0.3
618
Normal
-0.4
186
Normal
-0.4
574
Normal
-0.4
424
Normal
-0.4
172
Normal
-0.4
428
Normal
-0.4
426
Normal
-0.4
422
Normal
-0.4
958
Normal
-0.4
432
Normal
-0.4
162
Normal
-0.4
616
Normal
-0.4
966
Normal
-0.4
976
Normal
-0.5
232
Normal
-0.5
298
Normal
-0.5
278
Normal
-0.5
414
Normal
-0.5
142
Normal
-0.5
272
Normal
-0.6
258
Normal
-0.6
132
Normal
-0.6
136
Normal
-0.7
332
Normal
-0.8
314
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
