MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.2 nTPM
HPA Brain:27.2 nTPM
GTEx:12.2 nTPM
FANTOM5:40.2 Scaled Tags Per Million
Pig:27.8 nTPM
Mouse:17.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 27.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2828 Female, age 72, unknown 31.4
2586 Male, age 75, left hemisphere 31.0
2666 Male, age 74, left hemisphere 30.1
1870 Female, age 42, unknown 26.3
1833 Male, age 53, unknown 26.1
1830 Male, age 51, unknown 25.4
2219 Male, age 76, both hemispheres 23.6
2411 Female, age 72, unknown 23.5
2019 Male, age 18, unknown 22.3
1827 Male, age 72, unknown 22.2
Dorsal raphe nucleus
nTPM: 26.8
2016 Female, age 72, unknown 30.1
1828 Male, age 53, unknown 27.0
2298 Female, age 72, unknown 26.2
2047 Male, age 72, unknown 25.4
2750 Male, age 76, both hemispheres 25.4
Inferior colliculus
nTPM: 23.1
1890 Male, age 53, unknown 24.4
1848 Female, age 42, unknown 23.7
2097 Female, age 72, unknown 23.0
2849 Male, age 72, unknown 21.4
Median raphe nucleus
nTPM: 21.9
2220 Male, age 76, midline 21.9
Periaquaductal grey, anterior
nTPM: 26.2
2502 Female, age 75, unknown 31.1
1947 Male, age 18, unknown 23.8
1795 Male, age 51, unknown 23.7
Periaquaductal grey, dorsal
nTPM: 24.9
1840 Male, age 53, unknown 26.7
2850 Male, age 76, both hemispheres 24.9
2464 Female, age 72, unknown 24.5
1831 Male, age 72, unknown 23.5
Periaquaductal grey, lateral
nTPM: 23.9
2140 Male, age 76, both hemispheres 25.4
2053 Male, age 18, unknown 24.0
2272 Male, age 74, both hemispheres 22.4
Pretectal area
nTPM: 22.5
2224 Female, age 72, unknown 28.0
2825 Male, age 18, unknown 26.0
2316 Male, age 76, right hemisphere 25.1
2273 Male, age 74, both hemispheres 23.9
1815 Male, age 53, unknown 22.6
1817 Female, age 42, unknown 22.4
2667 Female, age 75, unknown 21.4
2407 Male, age 75, both hemispheres 20.8
1816 Male, age 51, unknown 19.3
1944 Female, age 72, unknown 19.3
2007 Male, age 72, unknown 18.5
Red nucleus
nTPM: 27.2
2769 Male, age 72, unknown 30.6
2227 Male, age 72, unknown 30.2
1904 Male, age 53, unknown 29.1
2503 Female, age 72, unknown 28.6
1954 Female, age 42, unknown 28.4
2823 Male, age 76, right hemisphere 27.4
1821 Female, age 72, unknown 27.3
1865 Male, age 51, unknown 26.7
2725 Female, age 75, unknown 26.3
2588 Male, age 74, left hemisphere 24.9
2785 Male, age 18, unknown 23.6
2584 Male, age 75, left hemisphere 22.9
Substantia nigra
nTPM: 24.6
2699 Male, age 18, unknown 34.0
2241 Male, age 72, unknown 27.4
1851 Male, age 51, unknown 27.1
2665 Male, age 74, both hemispheres 25.5
2409 Female, age 72, unknown 24.6
1916 Female, age 42, unknown 24.1
2590 Female, age 75, unknown 23.3
1889 Female, age 72, unknown 20.9
2583 Male, age 75, right hemisphere 20.3
1941 Male, age 53, unknown 19.3
Superior colliculus
nTPM: 24.3
2664 Male, age 75, both hemispheres 30.4
1995 Male, age 72, unknown 28.9
1839 Male, age 51, unknown 26.3
1913 Female, age 42, unknown 26.1
2587 Male, age 74, left hemisphere 23.4
1796 Male, age 53, unknown 22.8
2668 Female, age 75, unknown 22.7
2261 Male, age 18, unknown 21.5
2087 Female, age 72, unknown 20.9
1895 Male, age 76, right hemisphere 20.5
Ventral tegmental area
nTPM: 24.2
1942 Male, age 51, unknown 26.0
2021 Male, age 53, unknown 25.7
1915 Female, age 42, unknown 24.1
2223 Female, age 72, unknown 23.8
2218 Male, age 76, both hemispheres 23.1
2410 Female, age 72, unknown 22.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 12.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.2
Samples: 139

Max nTPM: 25.2
Min nTPM: 3.5
Std nTPM: 3.5
Median nTPM: 11.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 25.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 21.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 21.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 20.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 19.1
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 19.1
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 18.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 17.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 17.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 40.2
FF:10158-103A5 76 years, female 40.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.9
Samples: 4

Max nTPM: 32.1
Min nTPM: 25.3
Sample A Female 32.1
Sample B Female 25.3
Sample C Male 27.9
Sample D Male 26.1
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 35.4
Min nTPM: 19.5
Sample A Female 35.4
Sample B Female 27.8
Sample C Male 24.1
Sample D Male 19.5
Periaqueductal gray
nTPM: 25.6
Samples: 3

Max nTPM: 26.8
Min nTPM: 24.9
Sample B Female 26.8
Sample C Male 24.9
Sample D Male 25.1
Superior colliculi
nTPM: 23.7
Samples: 4

Max nTPM: 26.9
Min nTPM: 21.3
Sample A Female 26.9
Sample B Female 23.4
Sample C Male 21.3
Sample D Male 23.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 17.7
Min nTPM: 16.1
Sample A Male 17.7
Sample B Male 17.2
Sample C Female 16.8
Sample D Female 16.1

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